Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CYCSP40-201ENST00000575927 294 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 RN7SL52P-201ENST00000584271 284 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 IMMP1LP1-201ENST00000605170 488 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AC022001.1-201ENST00000605193 268 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AL353600.1-201ENST00000608148 251 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AP005131.7-201ENST00000610087 611 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 RN7SL787P-201ENST00000613000 284 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AL118522.2-201ENST00000616045 615 ntBASIC3.8□□□□□ -1.8
FOXA3P55318 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA3P55318 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
FOXA3P55318 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA3P55318 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA3P55318 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
FOXA3P55318 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 MTCO1P22-201ENST00000604619 1360 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 EEF1A1P21-201ENST00000512363 1344 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
FOXA3P55318 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 RNA5SP232-201ENST00000364144 119 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA3P55318 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 PPP2R2DP1-201ENST00000420526 637 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AL133173.1-201ENST00000423458 397 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 EIF4HP2-201ENST00000424380 563 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AL512637.1-201ENST00000439523 1231 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AL356121.1-201ENST00000442911 156 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 RHEBP2-201ENST00000450289 600 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AL645937.3-201ENST00000453647 936 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AC091180.1-201ENST00000462104 372 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 RNU2-45P-201ENST00000516068 187 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC084880.3-201ENST00000535921 541 ntTSL 4 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC078878.1-201ENST00000539832 958 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA3P55318 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC3.79□□□□□ -1.8
FOXA3P55318 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC133552.5-201ENST00000604266 540 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 BNIP3P35-201ENST00000604530 490 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
FOXA3P55318 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
FOXA3P55318 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC3.79□□□□□ -1.8
FOXA3P55318 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
FOXA3P55318 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 AC093909.5-201ENST00000621839 1799 ntBASIC3.79□□□□□ -1.8
FOXA3P55318 GHR-202ENST00000357703 4316 ntTSL 5 BASIC3.79□□□□□ -1.8
FOXA3P55318 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 AL359922.3-201ENST00000624779 1670 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.78□□□□□ -1.8
FOXA3P55318 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 UGT2B26P-201ENST00000508672 1613 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 SSXP3-201ENST00000442971 1300 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC3.78□□□□□ -1.8
FOXA3P55318 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
FOXA3P55318 IL6STP1-201ENST00000346911 1020 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 RNA5SP90-201ENST00000364801 99 ntBASIC3.78□□□□□ -1.8
FOXA3P55318 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
FOXA3P55318 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms