Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
USF1P22415 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 AC103591.2-201ENST00000265259 766 ntBASIC4.55□□□□□ -1.68
USF1P22415 RN7SKP103-201ENST00000363848 320 ntBASIC4.55□□□□□ -1.68
USF1P22415 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC4.55□□□□□ -1.68
USF1P22415 SRSF1P1-201ENST00000424058 520 ntBASIC4.55□□□□□ -1.68
USF1P22415 AL590762.4-201ENST00000425885 253 ntBASIC4.55□□□□□ -1.68
USF1P22415 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 NANOGP9-201ENST00000439890 892 ntBASIC4.55□□□□□ -1.68
USF1P22415 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.55□□□□□ -1.68
USF1P22415 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.55□□□□□ -1.68
USF1P22415 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.55□□□□□ -1.68
USF1P22415 RPL5P25-201ENST00000441148 775 ntBASIC4.55□□□□□ -1.68
USF1P22415 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.55□□□□□ -1.68
USF1P22415 AL672138.1-201ENST00000450604 1015 ntBASIC4.55□□□□□ -1.68
USF1P22415 RPL7P61-201ENST00000451721 751 ntBASIC4.55□□□□□ -1.68
USF1P22415 RN7SL188P-201ENST00000469842 285 ntBASIC4.55□□□□□ -1.68
USF1P22415 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC4.55□□□□□ -1.68
USF1P22415 AC138832.1-201ENST00000522871 556 ntBASIC4.55□□□□□ -1.68
USF1P22415 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.55□□□□□ -1.68
USF1P22415 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.55□□□□□ -1.68
USF1P22415 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.55□□□□□ -1.68
USF1P22415 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 AC006116.3-201ENST00000592968 361 ntBASIC4.55□□□□□ -1.68
USF1P22415 AC069307.1-201ENST00000602820 447 ntBASIC4.55□□□□□ -1.68
USF1P22415 QTRT1P1-201ENST00000604344 1078 ntBASIC4.55□□□□□ -1.68
USF1P22415 TAS2R6P-201ENST00000605022 826 ntBASIC4.55□□□□□ -1.68
USF1P22415 AC073342.3-201ENST00000624211 193 ntBASIC4.55□□□□□ -1.68
USF1P22415 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 AL022322.2-201ENST00000624072 20397 ntBASIC4.55□□□□□ -1.68
USF1P22415 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
USF1P22415 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.55□□□□□ -1.68
USF1P22415 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
USF1P22415 MTND5P23-201ENST00000430812 1655 ntBASIC4.54□□□□□ -1.68
USF1P22415 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 ABCC13-202ENST00000463099 3842 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC002525.1-201ENST00000624392 1622 ntBASIC4.54□□□□□ -1.68
USF1P22415 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 MUC2-202ENST00000613187 4845 ntBASIC4.54□□□□□ -1.68
USF1P22415 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
USF1P22415 DUTP5-201ENST00000406790 469 ntBASIC4.54□□□□□ -1.68
USF1P22415 RNA5SP487-201ENST00000410186 122 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC096921.1-201ENST00000411661 375 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC093162.1-201ENST00000419682 124 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.54□□□□□ -1.68
USF1P22415 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 HMGN2P27-201ENST00000427352 270 ntBASIC4.54□□□□□ -1.68
USF1P22415 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.54□□□□□ -1.68
USF1P22415 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 SNRPFP2-201ENST00000440710 251 ntBASIC4.54□□□□□ -1.68
USF1P22415 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 GAPDHP14-201ENST00000450472 937 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC083899.1-201ENST00000454465 3819 ntBASIC4.54□□□□□ -1.68
USF1P22415 AL035090.1-201ENST00000454835 332 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC091685.2-201ENST00000454924 864 ntBASIC4.54□□□□□ -1.68
USF1P22415 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 AC016687.1-201ENST00000482574 353 ntBASIC4.54□□□□□ -1.68
USF1P22415 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 RNU6-941P-201ENST00000516346 108 ntBASIC4.54□□□□□ -1.68
USF1P22415 BMPR1APS2-201ENST00000527904 1012 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC122688.1-201ENST00000541494 223 ntBASIC4.54□□□□□ -1.68
USF1P22415 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 AC005341.1-201ENST00000571086 708 ntBASIC4.54□□□□□ -1.68
USF1P22415 AC095055.1-201ENST00000603472 1113 ntBASIC4.54□□□□□ -1.68
USF1P22415 AL139124.1-201ENST00000609123 421 ntBASIC4.54□□□□□ -1.68
USF1P22415 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.54□□□□□ -1.68
USF1P22415 AC109583.2-201ENST00000617367 129 ntBASIC4.54□□□□□ -1.68
USF1P22415 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
USF1P22415 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
USF1P22415 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms