Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 OR9K1P-201ENST00000326513 941 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 DBIP1-201ENST00000401435 260 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 PPIAP9-201ENST00000403866 498 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 MIR1178-201ENST00000408396 91 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RNA5SP487-201ENST00000410186 122 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RNU2-72P-201ENST00000411175 163 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RNU2-22P-201ENST00000411266 212 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RPL5P25-201ENST00000441148 775 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AL035090.1-201ENST00000454835 332 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RN7SL214P-201ENST00000487317 265 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RN7SL30P-201ENST00000488416 306 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 RNA5SP34-201ENST00000516887 130 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC138832.1-201ENST00000522871 556 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC079064.1-201ENST00000528365 362 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC004825.1-201ENST00000555068 586 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC009852.2-201ENST00000567898 485 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 QTRT1P1-201ENST00000604344 1078 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 uc_338.7-201ENST00000621834 124 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC003973.3-201ENST00000624863 2822 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 MTND4P21-201ENST00000453886 1357 ntBASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
SNX9Q9Y5X1 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CUL4AP1-201ENST00000514750 1863 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AC005294.1-201ENST00000355509 281 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 SNORA67-201ENST00000384423 137 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 HSPA8P15-201ENST00000401676 786 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 Z68694.1-201ENST00000413929 841 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AL133482.1-201ENST00000415988 498 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 FTLP19-201ENST00000433300 394 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 NDUFA5P1-201ENST00000433858 341 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AC138761.5-201ENST00000433967 325 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 RPS11P7-201ENST00000442125 465 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 OR52Y1P-201ENST00000452418 828 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 TRBV8-1-201ENST00000481590 279 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 RPS21P4-201ENST00000487122 248 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 SCARNA20.4-201ENST00000516969 131 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CDC42P3-201ENST00000518493 633 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 IGLV2-28-201ENST00000520681 304 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 RN7SL356P-201ENST00000582228 248 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 AC024933.1-201ENST00000608472 348 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CYP4F35P-202ENST00000636121 390 ntBASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SNX9Q9Y5X1 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SNX9Q9Y5X1 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.74□□□□□ -1.49
SNX9Q9Y5X1 AC083899.1-201ENST00000454465 3819 ntBASIC5.74□□□□□ -1.49
SNX9Q9Y5X1 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms