Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CASC19-284ENST00000642142 1868 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.27□□□□□ -1.4
TRIM39Q9HCM9 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SNORD116-9-201ENST00000384000 95 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 RNU6-98P-201ENST00000384173 107 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SNORD116-3-201ENST00000384287 95 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SNORD116-7-201ENST00000384404 95 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SNORD116-5-201ENST00000384462 95 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 RN7SKP222-201ENST00000410651 315 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 U3.43-201ENST00000410734 213 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 NANOGP4-201ENST00000427230 913 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 VN1R108P-201ENST00000431580 830 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ARL4AP3-201ENST00000441452 574 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 CXCR2P1-202ENST00000443392 1074 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL133351.3-201ENST00000454998 193 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 RPL31P3-201ENST00000458430 332 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 TRBV8-2-201ENST00000475637 270 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC104971.1-201ENST00000495117 578 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 XKRY-201ENST00000510392 1100 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC093755.1-201ENST00000512950 1023 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 PTK2-220ENST00000520151 573 ntTSL 4 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC092865.1-201ENST00000544395 1023 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC073916.1-201ENST00000545095 130 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ELOCP32-201ENST00000548625 324 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC023310.2-201ENST00000553844 547 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AGGF1P7-201ENST00000562369 913 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 MTCYBP28-201ENST00000566728 1132 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC125494.2-201ENST00000602431 657 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC105129.3-201ENST00000605455 485 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL031601.1-201ENST00000605702 394 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL008723.3-201ENST00000608926 449 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC026124.2-201ENST00000621847 656 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AP003497.2-201ENST00000624220 967 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC018659.2-201ENST00000624690 715 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 AC130360.2-201ENST00000533477 1556 ntBASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.27□□□□□ -1.41
TRIM39Q9HCM9 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 ZNF736P9Y-201ENST00000439586 1345 ntBASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 AL049737.1-201ENST00000413920 1403 ntBASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
TRIM39Q9HCM9 BX284613.1-201ENST00000452221 1641 ntBASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms