Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 RBPJP2-201ENST00000618187 1444 ntBASIC5.39□□□□□ -1.55
PCDHGA1Q9Y5H4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.39□□□□□ -1.55
PCDHGA1Q9Y5H4 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHGA1Q9Y5H4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PCDHGA1Q9Y5H4 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL121950.1-201ENST00000624993 2077 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC110792.3-201ENST00000595906 1614 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC132825.1-201ENST00000463573 2247 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 RNU6-618P-201ENST00000363518 112 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 RN7SKP103-201ENST00000363848 320 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL109941.1-201ENST00000401925 229 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC007064.3-201ENST00000422608 359 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC093655.2-201ENST00000425735 631 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 VN1R21P-201ENST00000426703 765 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 MTCO1P45-201ENST00000431457 267 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 HIGD1AP8-201ENST00000453927 274 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC004129.2-201ENST00000457229 287 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AL035690.1-201ENST00000490892 383 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001922.4-201ENST00000526967 290 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 OR51C1P-201ENST00000608504 942 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC093388.1-201ENST00000609166 430 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC025574.2-201ENST00000615621 514 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AP002505.2-201ENST00000623585 696 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AC114876.1-201ENST00000490962 1366 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 STX3-208ENST00000641815 3236 ntBASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.38□□□□□ -1.55
PCDHGA1Q9Y5H4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC004656.1-201ENST00000568479 4951 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC007342.7-201ENST00000624610 2337 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC004158.1-201ENST00000564508 4319 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC233289.1-201ENST00000403700 508 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC015977.1-201ENST00000418887 292 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 PSMD10P3-201ENST00000437000 448 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 RPS11P7-201ENST00000442125 465 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 RNA5SP228-201ENST00000516232 133 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AL163952.1-202ENST00000569625 600 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AC016911.1-201ENST00000613297 452 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
PCDHGA1Q9Y5H4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 U3.2-201ENST00000362981 210 ntBASIC5.36□□□□□ -1.55
PCDHGA1Q9Y5H4 GNG5P2-201ENST00000372054 207 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms