Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 NPM1P19-201ENST00000450070 712 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 RPL7P45-201ENST00000455851 743 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 MTND6P32-201ENST00000457611 483 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC074386.1-201ENST00000476560 767 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 RN7SL177P-201ENST00000476596 299 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC058823.1-201ENST00000485315 474 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 OR11I1P-201ENST00000486033 954 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC021193.1-201ENST00000511607 420 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 RNU6-319P-201ENST00000516025 108 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC005341.1-201ENST00000571086 708 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC009027.1-201ENST00000604510 479 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AL592494.3-201ENST00000609485 464 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC008833.1-201ENST00000611633 691 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC005840.5-201ENST00000619166 599 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AP003400.3-201ENST00000624904 346 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC097063.1-201ENST00000426714 1797 ntBASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
ATG4BQ9Y4P1 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 HSPA8P14-201ENST00000552265 1805 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 ADAM24P-201ENST00000398655 2101 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC017019.1-201ENST00000426129 261 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 CFL1P1-202ENST00000432948 411 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 GAPDHP25-201ENST00000447061 1001 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 RPL31P53-201ENST00000457065 348 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC027026.1-201ENST00000532323 742 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC027281.1-201ENST00000574178 758 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 SNORD39.2-201ENST00000579995 76 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 BNIP3P7-201ENST00000605641 516 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC015922.4-201ENST00000612568 690 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC109583.2-201ENST00000617367 129 ntBASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
ATG4BQ9Y4P1 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
ATG4BQ9Y4P1 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.06□□□□□ -1.6
ATG4BQ9Y4P1 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
ATG4BQ9Y4P1 AL603750.1-201ENST00000624216 1717 ntBASIC5.06□□□□□ -1.6
ATG4BQ9Y4P1 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms