Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 AC114947.2-201ENST00000565748 2125 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.66□□□□□ -1.66
FOXF1Q12946 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 AC007618.1-201ENST00000366455 732 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
FOXF1Q12946 MIR1178-201ENST00000408396 91 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 AC211486.3-201ENST00000412694 621 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.66□□□□□ -1.66
FOXF1Q12946 NPM1P25-201ENST00000429734 854 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AC091180.1-201ENST00000462104 372 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AC005532.2-201ENST00000467154 373 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.66□□□□□ -1.66
FOXF1Q12946 RN7SL799P-201ENST00000475891 298 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 RN7SL727P-201ENST00000482164 296 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 RPS4XP14-201ENST00000493072 781 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.66□□□□□ -1.66
FOXF1Q12946 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 AP005432.2-201ENST00000608162 586 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 RPSAP73-201ENST00000614820 330 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 AC099494.2-201ENST00000623371 978 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.66□□□□□ -1.66
FOXF1Q12946 CR788268.1-201ENST00000603931 1809 ntBASIC4.66□□□□□ -1.66
FOXF1Q12946 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
FOXF1Q12946 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
FOXF1Q12946 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
FOXF1Q12946 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
FOXF1Q12946 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
FOXF1Q12946 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.66
FOXF1Q12946 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.65□□□□□ -1.66
FOXF1Q12946 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXF1Q12946 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 AL035079.1-201ENST00000405210 287 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 U3.36-201ENST00000408418 213 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXF1Q12946 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC005033.1-201ENST00000428904 813 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AL163193.1-201ENST00000444895 788 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 AC092647.2-201ENST00000452998 253 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.65□□□□□ -1.67
FOXF1Q12946 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC022832.1-201ENST00000530718 645 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXF1Q12946 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXF1Q12946 MIR3691-201ENST00000578066 90 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.65□□□□□ -1.67
FOXF1Q12946 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.65□□□□□ -1.67
FOXF1Q12946 AC015660.5-201ENST00000623238 564 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.65□□□□□ -1.67
FOXF1Q12946 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
FOXF1Q12946 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
FOXF1Q12946 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
FOXF1Q12946 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
FOXF1Q12946 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
FOXF1Q12946 TRIM51GP-201ENST00000534741 1350 ntBASIC4.65□□□□□ -1.67
FOXF1Q12946 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
FOXF1Q12946 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 RNU1-106P-201ENST00000384382 164 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXF1Q12946 RN7SKP114-201ENST00000410327 279 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AC009238.2-201ENST00000431026 355 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXF1Q12946 EEF1B2P5-201ENST00000444820 548 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 AL049874.2-201ENST00000492636 288 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 SNRPCP2-201ENST00000504370 475 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AC068993.1-201ENST00000546724 589 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 HAUS8P1-201ENST00000549005 542 ntBASIC4.64□□□□□ -1.67
FOXF1Q12946 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXF1Q12946 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.64□□□□□ -1.67
FOXF1Q12946 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms