Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 AP002963.1-201ENST00000530590 184 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC6.91□□□□□ -1.3
LIG3P49916 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 AC004825.1-201ENST00000555068 586 ntBASIC6.91□□□□□ -1.3
LIG3P49916 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC6.91□□□□□ -1.3
LIG3P49916 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.91□□□□□ -1.3
LIG3P49916 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC007255.2-201ENST00000604053 631 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AL359704.2-201ENST00000604335 521 ntBASIC6.91□□□□□ -1.3
LIG3P49916 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC006270.3-201ENST00000605967 1036 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 DLEU2_1.1-201ENST00000612089 120 ntBASIC6.91□□□□□ -1.3
LIG3P49916 DLEU2_1.2-201ENST00000614667 120 ntBASIC6.91□□□□□ -1.3
LIG3P49916 AL031658.2-201ENST00000616850 651 ntBASIC6.91□□□□□ -1.3
LIG3P49916 RMDN2-AS1-207ENST00000627614 765 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 AC135068.11-201ENST00000636378 921 ntBASIC6.91□□□□□ -1.3
LIG3P49916 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.91□□□□□ -1.3
LIG3P49916 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
LIG3P49916 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.91□□□□□ -1.3
LIG3P49916 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC6.91□□□□□ -1.3
LIG3P49916 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
LIG3P49916 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIG3P49916 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.9□□□□□ -1.3
LIG3P49916 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.9□□□□□ -1.3
LIG3P49916 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
LIG3P49916 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 DLEU2L-201ENST00000371086 3555 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 RNU6-185P-201ENST00000384421 107 ntBASIC6.9□□□□□ -1.3
LIG3P49916 LDHAP5-201ENST00000394996 622 ntBASIC6.9□□□□□ -1.3
LIG3P49916 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 AL132875.1-201ENST00000403623 949 ntBASIC6.9□□□□□ -1.3
LIG3P49916 RPS15AP38-201ENST00000413110 372 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 Z74696.2-201ENST00000436514 498 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.9□□□□□ -1.3
LIG3P49916 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AC093815.1-201ENST00000508637 280 ntBASIC6.9□□□□□ -1.3
LIG3P49916 B3GNTL1P1-201ENST00000509174 289 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC6.9□□□□□ -1.3
LIG3P49916 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 AP005902.2-201ENST00000518393 307 ntBASIC6.9□□□□□ -1.3
LIG3P49916 IGKV2D-38-201ENST00000518423 240 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 OR5G4P-201ENST00000525251 760 ntBASIC6.9□□□□□ -1.3
LIG3P49916 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.9□□□□□ -1.3
LIG3P49916 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.9□□□□□ -1.3
LIG3P49916 AL591767.3-201ENST00000554632 525 ntBASIC6.9□□□□□ -1.3
LIG3P49916 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC6.9□□□□□ -1.3
LIG3P49916 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.9□□□□□ -1.3
LIG3P49916 AC090181.2-201ENST00000602975 672 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.9□□□□□ -1.3
LIG3P49916 AC100793.4-201ENST00000613683 429 ntBASIC6.9□□□□□ -1.3
LIG3P49916 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.9□□□□□ -1.3
LIG3P49916 AC023158.2-201ENST00000614876 543 ntBASIC6.9□□□□□ -1.3
LIG3P49916 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIG3P49916 AC005899.6-201ENST00000620729 297 ntBASIC6.9□□□□□ -1.3
LIG3P49916 AC005858.3-201ENST00000624756 589 ntBASIC6.9□□□□□ -1.3
LIG3P49916 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms