Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX3P41225 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 CR788268.1-201ENST00000603931 1809 ntBASIC5.03□□□□□ -1.6
SOX3P41225 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 MIR133B-201ENST00000362210 119 ntBASIC5.03□□□□□ -1.6
SOX3P41225 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 AL390774.1-201ENST00000411924 246 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AL133325.1-201ENST00000421090 382 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 SRSF1P1-201ENST00000424058 520 ntBASIC5.03□□□□□ -1.6
SOX3P41225 RIMKLBP2-201ENST00000424737 654 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC106901.1-201ENST00000425086 698 ntBASIC5.03□□□□□ -1.6
SOX3P41225 PRUNEP1-201ENST00000425846 705 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 AL392003.1-201ENST00000434394 243 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 AZGP1P2-201ENST00000454506 345 ntBASIC5.03□□□□□ -1.6
SOX3P41225 COPS8P2-201ENST00000473228 627 ntBASIC5.03□□□□□ -1.6
SOX3P41225 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 RPS4XP1-201ENST00000482189 787 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC016687.1-201ENST00000482574 353 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC012123.2-201ENST00000485809 248 ntBASIC5.03□□□□□ -1.6
SOX3P41225 RPEP1-201ENST00000504507 658 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.03□□□□□ -1.6
SOX3P41225 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 AC009852.2-201ENST00000567898 485 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 RBM22P1-201ENST00000578589 1214 ntBASIC5.03□□□□□ -1.6
SOX3P41225 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.03□□□□□ -1.6
SOX3P41225 AC104307.1-201ENST00000616142 196 ntBASIC5.03□□□□□ -1.6
SOX3P41225 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.03□□□□□ -1.6
SOX3P41225 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX3P41225 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.03□□□□□ -1.6
SOX3P41225 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX3P41225 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.03□□□□□ -1.6
SOX3P41225 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SOX3P41225 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SOX3P41225 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX3P41225 AP001284.1-201ENST00000528393 2118 ntBASIC5.02□□□□□ -1.61
SOX3P41225 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 OR9K1P-201ENST00000326513 941 ntBASIC5.02□□□□□ -1.61
SOX3P41225 RNU6-171P-201ENST00000384354 107 ntBASIC5.02□□□□□ -1.61
SOX3P41225 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SOX3P41225 RNA5SP241-201ENST00000391326 114 ntBASIC5.02□□□□□ -1.61
SOX3P41225 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AL133388.1-201ENST00000404509 287 ntBASIC5.02□□□□□ -1.61
SOX3P41225 MIR1286-201ENST00000408112 78 ntBASIC5.02□□□□□ -1.61
SOX3P41225 MIR1178-201ENST00000408396 91 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AP000534.2-201ENST00000412729 568 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AL590623.1-201ENST00000427864 105 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 GSTM5P1-201ENST00000434751 660 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 RPS26P41-201ENST00000450370 284 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 AC104849.1-201ENST00000462623 405 ntBASIC5.02□□□□□ -1.61
SOX3P41225 RPL7P39-201ENST00000481157 744 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 RN7SL447P-201ENST00000494711 245 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX3P41225 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC5.02□□□□□ -1.61
SOX3P41225 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.02□□□□□ -1.61
SOX3P41225 AC026688.1-201ENST00000520639 1168 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.02□□□□□ -1.61
SOX3P41225 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.02□□□□□ -1.61
SOX3P41225 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SOX3P41225 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.02□□□□□ -1.61
SOX3P41225 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 MIR3908-201ENST00000579798 126 ntBASIC5.02□□□□□ -1.61
SOX3P41225 MIR1269B-201ENST00000580405 75 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SOX3P41225 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AC008115.4-201ENST00000619780 775 ntBASIC5.02□□□□□ -1.61
SOX3P41225 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 HPVC1-201ENST00000629899 1198 ntBASIC5.02□□□□□ -1.61
SOX3P41225 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.02□□□□□ -1.61
SOX3P41225 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AC091948.2-201ENST00000636510 279 ntBASIC5.02□□□□□ -1.61
SOX3P41225 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms