Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 Z95331.1-201ENST00000623075 23112 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC097063.1-201ENST00000426714 1797 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SNORA16A-201ENST00000384342 137 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 RNU1-149P-201ENST00000390870 161 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 U3.23-201ENST00000391132 200 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL645733.1-201ENST00000402250 217 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL133388.1-201ENST00000404509 287 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SRSF1P1-201ENST00000424058 520 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 IGBP1P3-201ENST00000447449 1000 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL596266.1-201ENST00000448132 400 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 TPRKBP1-201ENST00000456243 481 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC093815.1-201ENST00000508637 280 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 NPM1P21-201ENST00000513394 762 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 GAPDHP62-201ENST00000515313 990 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 OR5AM1P-201ENST00000532136 1032 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 OR11J2P-201ENST00000555298 907 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AP002884.5-201ENST00000595053 1132 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC026367.3-201ENST00000619032 590 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AL139254.3-201ENST00000641097 674 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 MSL3P1-202ENST00000440028 1468 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 AC116158.1-201ENST00000560231 2129 ntBASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC3Q9BQI4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 RNU1-43P-201ENST00000365052 165 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 MIR585-201ENST00000384887 94 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AL133270.1-201ENST00000402635 279 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 MAPRE1P3-201ENST00000435438 796 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AL500527.1-201ENST00000448532 255 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 PSAT1P4-201ENST00000466500 526 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 SNRPCP3-201ENST00000474888 476 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 MTND6P2-201ENST00000512226 524 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 RNU6-941P-201ENST00000516346 108 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC122688.1-201ENST00000541494 223 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 HNRNPCP1-201ENST00000556181 766 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AP005403.1-201ENST00000579720 229 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC005520.3-201ENST00000602874 370 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC093388.1-201ENST00000609166 430 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 Mico1.1-201ENST00000611698 204 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC009163.6-201ENST00000612367 342 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AL138960.1-201ENST00000613838 513 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC109583.2-201ENST00000617367 129 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 AC020633.1-201ENST00000468439 2247 ntBASIC5.29□□□□□ -1.56
CCDC3Q9BQI4 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms