Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC022360.1-201ENST00000521058 340 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC018767.2-201ENST00000562361 600 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC010503.3-201ENST00000594355 540 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 GMCL1P2-201ENST00000605230 823 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC008833.1-201ENST00000611633 691 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 NF1P10-201ENST00000613227 742 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC008115.3-201ENST00000614874 549 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AC015722.2-201ENST00000622210 551 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 AL359742.1-201ENST00000622497 540 ntBASIC5.39□□□□□ -1.55
VPS39Q96JC1 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
VPS39Q96JC1 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS39Q96JC1 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL034549.2-201ENST00000618285 3373 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC092376.2-201ENST00000622621 4116 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL603750.1-201ENST00000624216 1717 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 OOSP1-201ENST00000398992 1270 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 SNORA11.5-201ENST00000408163 128 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 RPS3P2-201ENST00000421346 701 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 FMO7P-201ENST00000436045 768 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 EEF1B2P6-201ENST00000445713 673 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 NPM1P19-201ENST00000450070 712 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC084754.1-201ENST00000463466 464 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC092754.1-201ENST00000472975 479 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL049874.2-201ENST00000492636 288 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC016559.2-201ENST00000510759 359 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 RN7SKP99-201ENST00000517028 307 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 MTCYBP13-201ENST00000578634 1093 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 RN7SL356P-201ENST00000582228 248 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC009027.1-201ENST00000604510 479 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC100767.2-201ENST00000604840 693 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC021106.3-201ENST00000623925 531 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AP002967.1-201ENST00000624203 539 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS39Q96JC1 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS39Q96JC1 CASC19-281ENST00000642118 1554 ntBASIC5.38□□□□□ -1.55
VPS39Q96JC1 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 HSPA8P14-201ENST00000552265 1805 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC010132.2-201ENST00000295493 1043 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 RN7SKP28-201ENST00000364770 305 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 RN7SKP153-201ENST00000365026 316 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 RNU1-74P-201ENST00000384108 171 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 SNORA16A-201ENST00000384342 137 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 MIR1282-201ENST00000408865 101 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 PCNPP4-201ENST00000414817 517 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS39Q96JC1 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.37□□□□□ -1.55
VPS39Q96JC1 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms