Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RPL23AP61-201ENST00000623642 466 ntBASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 AL390318.1-201ENST00000624564 687 ntBASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
NUP54Q7Z3B4 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AL603750.1-201ENST00000624216 1717 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 RN7SKP224-201ENST00000364140 325 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 SNORA27.3-201ENST00000364937 134 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 USP9YP19-201ENST00000412165 485 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 RPL6P29-201ENST00000414863 865 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC019070.1-201ENST00000415008 1024 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 RPA2P2-201ENST00000419698 796 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC099336.2-201ENST00000422457 254 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 MTCO3P43-201ENST00000440974 771 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC064862.4-201ENST00000442180 334 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC005297.1-201ENST00000444765 862 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC017099.1-201ENST00000448261 1028 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC099560.2-201ENST00000457554 255 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 NXT1P1-201ENST00000458481 316 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 RPS23P6-201ENST00000466136 431 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 RPL21P6-201ENST00000479171 504 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 DUTP1-201ENST00000493631 470 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 MGST2-204ENST00000506797 634 ntTSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC109481.1-201ENST00000509173 282 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC034244.2-201ENST00000514668 858 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 TMEM97P2-201ENST00000517841 403 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC112191.2-201ENST00000522428 333 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC125612.1-201ENST00000547580 377 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AL035661.1-201ENST00000620459 1144 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC026124.2-201ENST00000621847 656 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 LINC00216-201ENST00000623548 1126 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 MTND4P21-201ENST00000453886 1357 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AC093535.2-201ENST00000624769 2326 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 AL451142.2-201ENST00000429076 2090 ntBASIC5.24□□□□□ -1.57
NUP54Q7Z3B4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 RNA5SP46-201ENST00000362370 120 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 SNORA64.1-201ENST00000362600 132 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 MIR130A-201ENST00000385274 89 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 RMRPP5-201ENST00000411156 267 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 TRGV6-201ENST00000417928 299 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 AL662874.1-201ENST00000426065 230 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 RNF19BPX-201ENST00000426224 625 ntBASIC5.23□□□□□ -1.57
NUP54Q7Z3B4 AC104843.2-201ENST00000427666 297 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms