Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MTND4P24-201ENST00000424002 397 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC073508.1-201ENST00000428866 656 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 BX119321.1-201ENST00000428912 797 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC094019.1-201ENST00000434678 472 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC074367.1-201ENST00000438685 1125 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 RN7SL188P-201ENST00000469842 285 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC079080.1-201ENST00000479841 822 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC095052.1-201ENST00000509955 863 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 RNA5SP438-201ENST00000516561 112 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 Y_RNA.710-201ENST00000516975 110 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC109635.6-201ENST00000525487 1113 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AP005136.2-201ENST00000583253 1049 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC016542.1-201ENST00000608259 493 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 Mico1.1-201ENST00000611698 204 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 AC004076.2-201ENST00000620532 3323 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 MUC2-202ENST00000613187 4845 ntBASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC4.84□□□□□ -1.63
PDLIM3Q53GG5 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.84□□□□□ -1.64
PDLIM3Q53GG5 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
PDLIM3Q53GG5 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.64
PDLIM3Q53GG5 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.84□□□□□ -1.64
PDLIM3Q53GG5 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC4.84□□□□□ -1.64
PDLIM3Q53GG5 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC138907.8-201ENST00000623981 2256 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 SNORD115-48-201ENST00000364764 76 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL136131.1-201ENST00000406079 803 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 PTGES3P2-201ENST00000407942 482 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 NPM1P4-201ENST00000414095 812 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 METTL15P3-201ENST00000415522 1221 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 BX276092.6-201ENST00000430476 250 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC007563.3-201ENST00000433233 371 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 OR3D1P-201ENST00000438288 955 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC022431.1-201ENST00000450941 438 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 FRG2FP-204ENST00000453982 852 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AL133351.3-201ENST00000454998 193 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 BX276092.8-201ENST00000455722 250 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC091153.1-201ENST00000466297 402 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 RN7SL817P-201ENST00000480777 288 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 CEACAMP10-202ENST00000495431 496 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 OR8Q1P-201ENST00000526467 655 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 NOP56P3-201ENST00000549457 385 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC126615.2-201ENST00000553003 515 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC079148.1-201ENST00000565944 819 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 ZNF322P1-201ENST00000568013 1209 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC006272.2-201ENST00000594725 163 ntBASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.83□□□□□ -1.64
PDLIM3Q53GG5 AC005776.1-201ENST00000603164 290 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms