Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A1P20908 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A1P20908 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A1P20908 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A1P20908 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.97□□□□□ -1.61
COL5A1P20908 GTF2IP2-201ENST00000424290 697 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A1P20908 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 CYCSP42-201ENST00000450823 238 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC005412.2-201ENST00000492004 341 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 RPSAP51-201ENST00000497462 645 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC093720.1-201ENST00000505681 714 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC093824.1-201ENST00000508796 343 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 RN7SKP21-201ENST00000516503 220 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.97□□□□□ -1.61
COL5A1P20908 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.97□□□□□ -1.61
COL5A1P20908 AC008147.3-201ENST00000548666 354 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A1P20908 NMNAT1P1-201ENST00000554095 876 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 BGLT3-201ENST00000564523 994 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 TVP23CP2-201ENST00000571473 623 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AL109618.2-201ENST00000605527 211 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC099654.6-201ENST00000636487 512 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A1P20908 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A1P20908 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A1P20908 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL5A1P20908 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 AC063976.2-201ENST00000425667 3556 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 AC093297.3-201ENST00000607056 2517 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
COL5A1P20908 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 SNORA66-201ENST00000384792 133 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 RNU2-50P-201ENST00000410494 143 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.97□□□□□ -1.61
COL5A1P20908 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A1P20908 GLUD1P3-202ENST00000508551 200 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 GTF2IP11-201ENST00000526931 420 ntBASIC4.97□□□□□ -1.61
COL5A1P20908 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.97□□□□□ -1.61
COL5A1P20908 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
COL5A1P20908 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC4.97□□□□□ -1.61
COL5A1P20908 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A1P20908 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC4.96□□□□□ -1.61
COL5A1P20908 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC4.96□□□□□ -1.61
COL5A1P20908 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL5A1P20908 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A1P20908 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
COL5A1P20908 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
COL5A1P20908 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.96□□□□□ -1.62
COL5A1P20908 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A1P20908 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.96□□□□□ -1.62
COL5A1P20908 GLULP6-201ENST00000399502 913 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 AC069213.2-201ENST00000420238 366 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 RPL18P10-201ENST00000425606 538 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A1P20908 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A1P20908 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A1P20908 AC063943.1-201ENST00000465434 453 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 AC090058.1-201ENST00000498788 435 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC097173.1-201ENST00000505862 819 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC034205.1-201ENST00000520621 638 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC100784.1-201ENST00000522790 310 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A1P20908 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A1P20908 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 AL512782.1-201ENST00000603093 364 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC103792.1-201ENST00000603591 919 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 AC019193.2-201ENST00000610012 634 ntBASIC4.96□□□□□ -1.62
COL5A1P20908 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A1P20908 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC4.96□□□□□ -1.62
COL5A1P20908 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A1P20908 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms