Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC074367.1-201ENST00000438685 1125 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 XKRY2-201ENST00000442362 1093 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 MTND2P39-201ENST00000457230 764 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC090543.1-201ENST00000492168 485 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 SEPT10P1-201ENST00000517342 1162 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 MAL2-207ENST00000522828 603 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC008126.1-201ENST00000549019 480 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL450270.1-201ENST00000606160 391 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC108865.2-201ENST00000606881 432 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL592494.3-201ENST00000609485 464 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 MIR6793-201ENST00000612376 63 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL162574.1-201ENST00000615702 950 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC080188.3-201ENST00000624842 748 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL138960.2-201ENST00000625145 535 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 AP001002.1-201ENST00000625148 1513 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AC097461.1-201ENST00000568928 2821 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 AL356317.1-201ENST00000396110 1436 ntBASIC4.8□□□□□ -1.64
NKX3-1Q99801 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NKX3-1Q99801 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.8□□□□□ -1.64
NKX3-1Q99801 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL512283.1-201ENST00000606756 1384 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC093849.1-201ENST00000563631 2209 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RNA5SP30-201ENST00000365552 115 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 NENFP1-201ENST00000419476 466 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AL034379.1-201ENST00000423216 253 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 HMGN2P27-201ENST00000427352 270 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 RPL7P56-201ENST00000429441 717 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RPL31P15-201ENST00000449770 338 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 PPIAP20-201ENST00000449839 135 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 MTND6P32-201ENST00000457611 483 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 NXT1P1-201ENST00000458481 316 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 SNORD125-201ENST00000459538 96 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 PSAT1P4-201ENST00000466500 526 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NKX3-1Q99801 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC092709.1-201ENST00000521355 1045 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AC112191.2-201ENST00000522428 333 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.79□□□□□ -1.64
NKX3-1Q99801 AP003049.1-201ENST00000529418 457 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 HMGN2P36-201ENST00000529541 409 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 OR4R2P-201ENST00000530815 597 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 OR4A43P-201ENST00000532938 908 ntBASIC4.79□□□□□ -1.64
NKX3-1Q99801 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 387.5 ms