Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC090666.1-201ENST00000578241 445 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC008507.2-201ENST00000588402 1176 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AL445435.1-201ENST00000604232 665 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AL592494.3-201ENST00000609485 464 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC124016.2-201ENST00000610058 665 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC078880.5-201ENST00000617845 421 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 AC126544.2-201ENST00000625174 749 ntBASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.98□□□□□ -1.29
SMC1BQ8NDV3 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC093909.5-201ENST00000621839 1799 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 HDAC1P2-201ENST00000453661 1398 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 TAF9BP2-201ENST00000400856 499 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AL355615.1-201ENST00000406187 641 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 RPS16P5-201ENST00000406501 404 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 BX664727.1-201ENST00000416024 466 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 HYALP1-201ENST00000417674 1279 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 MTCO1P51-201ENST00000427672 1060 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC087672.1-201ENST00000479876 766 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 Y_RNA.717-201ENST00000517106 92 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AP003080.1-202ENST00000526526 915 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 MIR4509-3-201ENST00000578671 94 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC027229.1-201ENST00000583887 253 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 MIR4509-2-201ENST00000583920 94 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC079880.2-201ENST00000603790 1213 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC069431.2-201ENST00000604149 1099 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC112503.1-201ENST00000608436 391 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC009974.1-201ENST00000608881 455 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 MIR4509-1-201ENST00000618224 94 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AP000484.1-201ENST00000620067 1252 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC105114.1-201ENST00000624795 1862 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AC073869.10-201ENST00000642016 354 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 AL136531.3-201ENST00000624378 3658 ntBASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
SMC1BQ8NDV3 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 UGT2B24P-201ENST00000514441 1597 ntBASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
SMC1BQ8NDV3 RNA5SP131-201ENST00000365452 119 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 SNORA62-201ENST00000365493 153 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 RPL10P10-201ENST00000403509 664 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 HNRNPA3P4-201ENST00000427514 803 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 HMGB3P5-201ENST00000428894 612 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 MTCYBP21-201ENST00000443300 1113 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 CUBNP2-201ENST00000443534 1139 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC020898.1-201ENST00000474167 787 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 RPS3AP15-201ENST00000483874 781 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AL359715.3-201ENST00000569267 2123 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 MTATP6P24-201ENST00000576835 677 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 TAS2R6P-201ENST00000605022 826 ntBASIC6.96□□□□□ -1.3
SMC1BQ8NDV3 AC145423.1-201ENST00000605712 336 ntBASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms