Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC025574.2-201ENST00000615621 514 ntBASIC5.84□□□□□ -1.47
HDAC4P56524 AC099654.6-201ENST00000636487 512 ntBASIC5.84□□□□□ -1.47
HDAC4P56524 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDAC4P56524 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.84□□□□□ -1.47
HDAC4P56524 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HDAC4P56524 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HDAC4P56524 SAMMSON-213ENST00000641336 1521 ntBASIC5.84□□□□□ -1.48
HDAC4P56524 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 AL078621.3-201ENST00000623707 2042 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 SNORA27.3-201ENST00000364937 134 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 RPL17P35-201ENST00000432217 549 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 ARL5AP3-201ENST00000439327 386 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 AP000547.1-201ENST00000454360 617 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 RPS4XP14-201ENST00000493072 781 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 SETP12-201ENST00000514068 805 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 AC111000.6-201ENST00000514471 709 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.83□□□□□ -1.48
HDAC4P56524 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 OR8Q1P-201ENST00000526467 655 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 DUX4L52-201ENST00000549363 777 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 IGBP1P1-201ENST00000554337 1009 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 MIR3614-201ENST00000581261 86 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.83□□□□□ -1.48
HDAC4P56524 AC008521.2-201ENST00000591021 259 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 AL158062.1-201ENST00000619632 745 ntBASIC5.83□□□□□ -1.48
HDAC4P56524 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.83□□□□□ -1.48
HDAC4P56524 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
HDAC4P56524 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDAC4P56524 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
HDAC4P56524 AC114786.1-201ENST00000512892 1415 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
HDAC4P56524 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HDAC4P56524 YES1P1-201ENST00000418510 1628 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.82□□□□□ -1.48
HDAC4P56524 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.82□□□□□ -1.48
HDAC4P56524 RNA5SP46-201ENST00000362370 120 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 RNU4-39P-201ENST00000362455 127 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 RNU6-249P-201ENST00000363016 102 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.82□□□□□ -1.48
HDAC4P56524 RNA5SP187-201ENST00000384400 119 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 SNORA17A-201ENST00000391185 133 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 AL596448.1-201ENST00000415024 392 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.82□□□□□ -1.48
HDAC4P56524 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.82□□□□□ -1.48
HDAC4P56524 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.82□□□□□ -1.48
HDAC4P56524 RPL34P3-201ENST00000421454 338 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 AC007161.1-204ENST00000423039 460 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 CHEK2P5-201ENST00000423877 246 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDAC4P56524 RPS27AP6-201ENST00000427962 448 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.82□□□□□ -1.48
HDAC4P56524 AC099670.2-201ENST00000435130 321 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 ARAFP2-201ENST00000440565 559 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 AL691517.1-201ENST00000440833 1235 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 RPL5P25-201ENST00000441148 775 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 EEF1B2P6-201ENST00000445713 673 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 RAB28P3-201ENST00000448325 597 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 MTND5P8-201ENST00000449817 1083 ntBASIC5.82□□□□□ -1.48
HDAC4P56524 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms