Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 SUMO2P1-206ENST00000445436 284 ntBASIC6.04□□□□□ -1.44
COPB1P53618 HMGN1P5-201ENST00000448591 263 ntBASIC6.04□□□□□ -1.44
COPB1P53618 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 AC087672.1-201ENST00000479876 766 ntBASIC6.04□□□□□ -1.44
COPB1P53618 TRAV31-201ENST00000502780 342 ntBASIC6.04□□□□□ -1.44
COPB1P53618 IGBP1P4-201ENST00000503202 879 ntBASIC6.04□□□□□ -1.44
COPB1P53618 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC6.04□□□□□ -1.44
COPB1P53618 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.04□□□□□ -1.44
COPB1P53618 AC108157.1-201ENST00000510511 539 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC092709.1-201ENST00000521355 1045 ntBASIC6.04□□□□□ -1.44
COPB1P53618 HMGB1P42-201ENST00000532126 553 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC6.04□□□□□ -1.44
COPB1P53618 AC093510.2-201ENST00000562820 896 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC019322.1-201ENST00000571869 389 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC027281.1-201ENST00000574178 758 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC012146.2-201ENST00000576545 416 ntBASIC6.04□□□□□ -1.44
COPB1P53618 RN7SL290P-201ENST00000578661 300 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC6.04□□□□□ -1.44
COPB1P53618 AL049840.6-201ENST00000604583 345 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AL158050.2-201ENST00000605336 568 ntBASIC6.04□□□□□ -1.44
COPB1P53618 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC6.04□□□□□ -1.44
COPB1P53618 RN7SL544P-201ENST00000617232 284 ntBASIC6.04□□□□□ -1.44
COPB1P53618 MIR6729-201ENST00000618194 65 ntBASIC6.04□□□□□ -1.44
COPB1P53618 RN7SL763P-201ENST00000620922 284 ntBASIC6.04□□□□□ -1.44
COPB1P53618 uc_338.7-201ENST00000621834 124 ntBASIC6.04□□□□□ -1.44
COPB1P53618 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
COPB1P53618 AC073869.8-201ENST00000641806 335 ntBASIC6.04□□□□□ -1.44
COPB1P53618 MTCO1P4-201ENST00000520516 1409 ntBASIC6.04□□□□□ -1.44
COPB1P53618 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.04□□□□□ -1.44
COPB1P53618 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.04□□□□□ -1.44
COPB1P53618 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
COPB1P53618 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COPB1P53618 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
COPB1P53618 AC004158.1-201ENST00000564508 4319 ntBASIC6.04□□□□□ -1.44
COPB1P53618 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
COPB1P53618 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COPB1P53618 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
COPB1P53618 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.03□□□□□ -1.44
COPB1P53618 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.03□□□□□ -1.44
COPB1P53618 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COPB1P53618 AC087565.3-202ENST00000642085 1603 ntBASIC6.03□□□□□ -1.44
COPB1P53618 Z83820.1-201ENST00000456978 1499 ntBASIC6.03□□□□□ -1.44
COPB1P53618 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
COPB1P53618 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 RNA5SP241-201ENST00000391326 114 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC017078.1-201ENST00000416146 368 ntBASIC6.03□□□□□ -1.44
COPB1P53618 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC6.03□□□□□ -1.44
COPB1P53618 IPPKP1-201ENST00000422501 768 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 MTCYBP15-201ENST00000433123 1127 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC092106.1-201ENST00000444291 373 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC090804.1-201ENST00000448870 490 ntBASIC6.03□□□□□ -1.44
COPB1P53618 RNU7-157P-201ENST00000459600 66 ntBASIC6.03□□□□□ -1.44
COPB1P53618 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.03□□□□□ -1.44
COPB1P53618 GTF2IP9-201ENST00000502460 301 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.03□□□□□ -1.44
COPB1P53618 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.03□□□□□ -1.44
COPB1P53618 AC010468.3-201ENST00000508225 458 ntBASIC6.03□□□□□ -1.44
COPB1P53618 SCARNA20.4-201ENST00000516969 131 ntBASIC6.03□□□□□ -1.44
COPB1P53618 OR8G3P-201ENST00000533406 921 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC005000.1-201ENST00000536192 288 ntBASIC6.03□□□□□ -1.44
COPB1P53618 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC6.03□□□□□ -1.44
COPB1P53618 OR11H3P-201ENST00000554547 982 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC008521.2-201ENST00000591021 259 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.03□□□□□ -1.44
COPB1P53618 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC6.03□□□□□ -1.44
COPB1P53618 ZNF92P2-201ENST00000600543 1059 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 AP000769.2-201ENST00000602344 396 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AP000894.4-201ENST00000610185 483 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC005156.1-201ENST00000613371 573 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AP000770.2-201ENST00000623694 100 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC135068.5-201ENST00000624197 983 ntBASIC6.03□□□□□ -1.44
COPB1P53618 AC007683.2-201ENST00000624681 714 ntBASIC6.03□□□□□ -1.44
COPB1P53618 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC6.03□□□□□ -1.44
COPB1P53618 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
COPB1P53618 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
COPB1P53618 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms