Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.5□□□□□ -1.53
COL4A4P53420 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.49□□□□□ -1.53
COL4A4P53420 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL4A4P53420 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 RNA5SP90-201ENST00000364801 99 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
COL4A4P53420 SNORA48.4-201ENST00000391089 134 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 MIR1182-201ENST00000408363 97 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.49□□□□□ -1.53
COL4A4P53420 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 RPL19P16-201ENST00000433839 588 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 HMGN2P25-201ENST00000486956 268 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AC083829.1-201ENST00000503756 657 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 SLC25A15P5-201ENST00000508033 253 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AC111000.6-201ENST00000514471 709 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 IGKV1-32-201ENST00000519290 311 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.49□□□□□ -1.53
COL4A4P53420 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 MIR3160-1-201ENST00000577972 85 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 AC011944.2-201ENST00000624440 683 ntBASIC5.49□□□□□ -1.53
COL4A4P53420 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
COL4A4P53420 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
COL4A4P53420 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
COL4A4P53420 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 AL031123.3-201ENST00000623345 1837 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AC079298.1-201ENST00000625026 1619 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AC010928.1-201ENST00000592477 1447 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AL590240.1-201ENST00000334118 313 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 RN7SKP16-201ENST00000410180 299 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
COL4A4P53420 AL137845.2-201ENST00000444292 988 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 GAPDHP14-201ENST00000450472 937 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 ATP5A1P7-201ENST00000453978 1279 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC138701.1-201ENST00000524329 714 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.48□□□□□ -1.53
COL4A4P53420 RN7SL290P-201ENST00000578661 300 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 MIR4284-201ENST00000578924 81 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 AC009027.1-201ENST00000604510 479 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 AL121873.1-201ENST00000616013 524 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 AC144833.1-201ENST00000567953 4089 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
COL4A4P53420 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
COL4A4P53420 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
COL4A4P53420 DHX40P1-201ENST00000588725 1412 ntBASIC5.48□□□□□ -1.53
COL4A4P53420 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL4A4P53420 RNA5SP191-201ENST00000362585 102 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AL354766.1-201ENST00000423396 542 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.47□□□□□ -1.53
COL4A4P53420 AC016772.1-201ENST00000444170 1261 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 PRPF38AP1-201ENST00000451976 933 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 PSAT1P4-201ENST00000466500 526 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 RPL12P20-201ENST00000475538 479 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC093827.1-201ENST00000480094 861 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC093824.1-201ENST00000508796 343 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.47□□□□□ -1.53
COL4A4P53420 ASB8-204ENST00000536071 568 ntTSL 4 BASIC5.47□□□□□ -1.53
COL4A4P53420 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.47□□□□□ -1.53
COL4A4P53420 BGLT3-201ENST00000564523 994 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 AC091932.2-201ENST00000623014 291 ntBASIC5.47□□□□□ -1.53
COL4A4P53420 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC5.47□□□□□ -1.53
COL4A4P53420 AC092451.3-201ENST00000625067 1343 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms