Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL513548.1-201ENST00000562904 1724 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 RNU6-891P-201ENST00000384280 111 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL445213.1-201ENST00000412589 747 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL356968.2-201ENST00000412769 1257 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 MARK2P12-201ENST00000420129 585 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL356806.1-201ENST00000422524 916 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL034379.1-201ENST00000423216 253 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC074386.1-201ENST00000476560 767 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 RPEP1-201ENST00000504507 658 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 GLUD1P3-202ENST00000508551 200 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 HMGB1P44-201ENST00000508597 572 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC109464.1-201ENST00000511091 819 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 RBM22P1-201ENST00000578589 1214 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC006363.1-201ENST00000603806 463 ntBASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
SNX9Q9Y5X1 RARSP1-201ENST00000542842 1418 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 SNORD56.6-201ENST00000384569 71 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 MT-RNR1-201ENST00000389680 954 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 GNG5P5-201ENST00000420444 220 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 DSTNP5-201ENST00000427921 523 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 RPS26P41-201ENST00000450370 284 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AL672138.1-201ENST00000450604 1015 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AL606490.1-201ENST00000452266 765 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AL356390.1-201ENST00000455684 397 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 PSAT1P4-201ENST00000466500 526 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 RPS4XP1-201ENST00000482189 787 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 RN7SL629P-201ENST00000489622 285 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 RN7SL447P-201ENST00000494711 245 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC019227.1-201ENST00000526902 510 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC090022.1-201ENST00000546569 311 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC126177.5-201ENST00000549599 178 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AP000769.2-201ENST00000602344 396 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC007423.1-201ENST00000605009 627 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC026790.2-201ENST00000606282 430 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 SNORA35B-201ENST00000607417 129 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 OR8G7P-201ENST00000616658 848 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC021766.1-201ENST00000624404 741 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AL138960.2-201ENST00000625145 535 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC073869.7-201ENST00000640874 297 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 AC073869.8-201ENST00000641806 335 ntBASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
SNX9Q9Y5X1 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms