Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 RNA5SP183-201ENST00000362452 119 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC096921.1-201ENST00000411661 375 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 RCC2P2-201ENST00000422174 918 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC009784.1-201ENST00000426484 460 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC092017.2-201ENST00000427600 362 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 FABP7P2-201ENST00000429946 379 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 TMEM183AP1-205ENST00000432739 290 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 USP24P1-201ENST00000433802 779 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 RPL12P39-201ENST00000455456 496 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC108161.1-201ENST00000461060 402 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 SEPT7P6-201ENST00000469999 1143 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 PMS2P3-207ENST00000529061 717 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 CR383656.6-201ENST00000550518 394 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 NPM1P42-201ENST00000560329 862 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 MIR4675-201ENST00000577898 77 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 MIR3691-201ENST00000578066 90 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AL135786.2-201ENST00000608422 615 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AP002505.2-201ENST00000623585 696 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC015813.6-201ENST00000624409 5808 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC140134.1-201ENST00000511830 3544 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC092070.2-203ENST00000598377 3644 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 RNU11-201ENST00000387069 134 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AL390774.1-201ENST00000411924 246 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 RNGTTP1-201ENST00000420965 728 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC092651.1-201ENST00000426110 312 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC005033.1-201ENST00000428904 813 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 OR52B5P-201ENST00000435337 951 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC092106.1-201ENST00000444291 373 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AL049874.4-201ENST00000557593 255 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 MIR4436B2-201ENST00000581415 91 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 MIR4436B1-201ENST00000583272 91 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AL360012.1-201ENST00000602813 131 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC243960.7-201ENST00000623532 707 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 OR52B5P-202ENST00000641118 1110 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC144833.1-201ENST00000567953 4089 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AC023421.1-201ENST00000590535 1785 ntBASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms