Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.54□□□□□ -1.36
EPHB3P54753 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 MTHFD2P5-201ENST00000320415 844 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
EPHB3P54753 SUGT1P2-201ENST00000379452 992 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 SNORD116-12-201ENST00000384468 92 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 RNU6-83P-201ENST00000384568 112 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 RN7SKP263-201ENST00000411194 309 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC6.54□□□□□ -1.36
EPHB3P54753 OR6C64P-201ENST00000419708 825 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 AC011233.1-201ENST00000422812 283 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC6.54□□□□□ -1.36
EPHB3P54753 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 GTF2IP7-202ENST00000436677 309 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC6.54□□□□□ -1.36
EPHB3P54753 MTCYBP1-201ENST00000454315 1119 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC084754.1-201ENST00000463466 464 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.54□□□□□ -1.36
EPHB3P54753 RPL21P47-201ENST00000483696 477 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 MTAPP1-201ENST00000489154 819 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC6.54□□□□□ -1.36
EPHB3P54753 RNU6-232P-201ENST00000517144 64 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC060775.1-201ENST00000518241 520 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC002400.1-201ENST00000569310 726 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 MTCO3P24-201ENST00000572729 782 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 AC068768.2-201ENST00000602352 343 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AL356055.1-201ENST00000602528 446 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 DUXAP11-201ENST00000603858 526 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AL591167.1-201ENST00000607321 456 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC105227.2-201ENST00000615075 605 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC091931.1-201ENST00000623488 728 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AL356596.1-201ENST00000624230 379 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 SNX18P12-201ENST00000624821 759 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 AC010608.2-201ENST00000624830 470 ntBASIC6.54□□□□□ -1.36
EPHB3P54753 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC6.54□□□□□ -1.36
EPHB3P54753 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
EPHB3P54753 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
EPHB3P54753 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.54□□□□□ -1.36
EPHB3P54753 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.53□□□□□ -1.36
EPHB3P54753 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.53□□□□□ -1.36
EPHB3P54753 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC6.53□□□□□ -1.36
EPHB3P54753 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 AL591848.4-201ENST00000567832 3472 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC6.53□□□□□ -1.36
EPHB3P54753 Y_RNA.6-201ENST00000362350 114 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 AL663109.1-201ENST00000411498 844 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.53□□□□□ -1.36
EPHB3P54753 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC6.53□□□□□ -1.36
EPHB3P54753 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.53□□□□□ -1.36
EPHB3P54753 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.53□□□□□ -1.36
EPHB3P54753 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.53□□□□□ -1.36
EPHB3P54753 DEFB130D-201ENST00000426866 237 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.53□□□□□ -1.36
EPHB3P54753 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC6.53□□□□□ -1.36
EPHB3P54753 RPS24P1-201ENST00000438550 371 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.53□□□□□ -1.36
EPHB3P54753 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
EPHB3P54753 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC6.53□□□□□ -1.36
EPHB3P54753 OTX2P1-201ENST00000450956 354 ntBASIC6.53□□□□□ -1.36
EPHB3P54753 CFL1P4-201ENST00000451536 498 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms