Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HNRNPCP1-201ENST00000556181 766 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC6.53□□□□□ -1.36
SMARCA1P28370 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC068620.3-201ENST00000602749 560 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 FAM72A-208ENST00000607379 1139 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC008115.3-201ENST00000614874 549 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 MIR1264-201ENST00000616374 69 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AL445528.2-201ENST00000620582 470 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC008691.1-209ENST00000642094 814 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.53□□□□□ -1.36
SMARCA1P28370 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 AL591135.1-201ENST00000401578 5914 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
SMARCA1P28370 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC083899.1-201ENST00000454465 3819 ntBASIC6.53□□□□□ -1.36
SMARCA1P28370 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SMARCA1P28370 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.53□□□□□ -1.36
SMARCA1P28370 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
SMARCA1P28370 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 AC114786.1-201ENST00000512892 1415 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 AC125336.1-201ENST00000508893 2827 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 PROS2P-201ENST00000474651 1951 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 RNU6-1257P-201ENST00000384625 110 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 RN7SKP206-201ENST00000410823 293 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 RMRPP5-201ENST00000411156 267 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.52□□□□□ -1.37
SMARCA1P28370 OR10T1P-201ENST00000424327 947 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 Z80107.1-201ENST00000436830 412 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 OFD1P3Y-201ENST00000453312 783 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 RPS3AP53-201ENST00000454716 778 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 NPM1P17-201ENST00000479221 602 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 AC015864.1-201ENST00000496512 544 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC6.52□□□□□ -1.37
SMARCA1P28370 MTCO3P27-201ENST00000514397 196 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 RN7SKP253-201ENST00000516424 309 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 SOX5P1-201ENST00000524155 1127 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
SMARCA1P28370 AC093014.1-201ENST00000548926 724 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.52□□□□□ -1.37
SMARCA1P28370 CDC42EP3P1-201ENST00000601004 764 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 AL691477.1-201ENST00000624398 162 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.52□□□□□ -1.37
SMARCA1P28370 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.52□□□□□ -1.37
SMARCA1P28370 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
SMARCA1P28370 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.52□□□□□ -1.37
SMARCA1P28370 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
SMARCA1P28370 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
SMARCA1P28370 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 AL645568.2-201ENST00000432815 1337 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC017002.4-201ENST00000604721 1525 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AP005432.1-201ENST00000580891 3485 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SMARCA1P28370 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 RN7SKP69-201ENST00000365390 305 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC087752.1-201ENST00000391360 558 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC005042.1-201ENST00000393397 800 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 Z86062.1-201ENST00000406773 777 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 RNU6-584P-201ENST00000410350 95 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 RPS6P23-201ENST00000413224 722 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC007161.1-204ENST00000423039 460 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AL133173.1-201ENST00000423458 397 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 NAP1L4P2-201ENST00000425958 899 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC021876.1-201ENST00000425959 359 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 AC242426.1-201ENST00000435270 960 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC6.51□□□□□ -1.37
SMARCA1P28370 EEF1B2P6-201ENST00000445713 673 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 BUD31P2-201ENST00000449374 300 ntBASIC6.51□□□□□ -1.37
SMARCA1P28370 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC6.51□□□□□ -1.37
SMARCA1P28370 RN7SL717P-201ENST00000478343 297 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms