Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CDH12P3-201ENST00000517935 295 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC091163.3-201ENST00000518269 1144 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 CDH12P1-201ENST00000518435 295 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 OR10G5P-201ENST00000532733 358 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC027455.1-201ENST00000574104 594 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC010620.1-201ENST00000601088 1102 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC020765.1-201ENST00000604296 328 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AL135786.2-201ENST00000608422 615 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC004232.3-201ENST00000622977 525 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AP003497.2-201ENST00000624220 967 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 FRG1EP-201ENST00000634469 770 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.71□□□□□ -1.34
COL6A1P12109 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
COL6A1P12109 OR7A1P-202ENST00000641542 1158 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 AL390862.1-201ENST00000635467 1469 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 GUCY1B2-204ENST00000531898 1979 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
COL6A1P12109 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 MRRFP1-201ENST00000435941 1675 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL6A1P12109 AP002370.1-201ENST00000528055 1602 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL6A1P12109 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 OR11H13P-201ENST00000359695 979 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 MIR421-201ENST00000365696 85 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 AL645927.1-201ENST00000396783 406 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 RPL10P10-201ENST00000403509 664 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 RN7SKP59-201ENST00000410520 314 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 AK4P4-201ENST00000419465 646 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC016907.1-201ENST00000419483 435 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 RPS15AP30-201ENST00000420976 390 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC6.7□□□□□ -1.34
COL6A1P12109 RPL5P2-201ENST00000429598 854 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC126120.1-201ENST00000431082 470 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC012075.1-201ENST00000436549 580 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 EEF1B2P6-201ENST00000445713 673 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 AC016027.4-201ENST00000450866 277 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AL606490.1-201ENST00000452266 765 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 RPS23P6-201ENST00000466136 431 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 RPS17P11-201ENST00000474297 293 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 STRADBP1-201ENST00000478954 1281 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 SETP6-201ENST00000479329 568 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 NPM1P29-201ENST00000483112 803 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 HMGB1P38-201ENST00000490557 577 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC109481.1-201ENST00000509173 282 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 SNORA43.3-201ENST00000517240 103 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AP001207.2-201ENST00000519490 539 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 IGHV1-14-201ENST00000523391 241 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC090819.1-201ENST00000523800 1111 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.7□□□□□ -1.34
COL6A1P12109 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 AC010503.3-201ENST00000594355 540 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 FKBP1AP1-201ENST00000594588 318 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 AL133370.2-201ENST00000619934 439 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC6.7□□□□□ -1.34
COL6A1P12109 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC6.7□□□□□ -1.34
COL6A1P12109 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.7□□□□□ -1.34
COL6A1P12109 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
COL6A1P12109 SAMMSON-210ENST00000641260 1308 ntBASIC6.7□□□□□ -1.34
COL6A1P12109 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL6A1P12109 MTND4P8-201ENST00000514997 1362 ntBASIC6.69□□□□□ -1.34
COL6A1P12109 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
COL6A1P12109 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms