Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 AC125311.2-201ENSMUST00000227477 1940 ntBASIC14.52□□□□□ -0.09
Nkx3-1P97436 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Gm13186-201ENSMUST00000118031 316 ntBASIC14.51□□□□□ -0.09
Nkx3-1P97436 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Gm34391-201ENSMUST00000203706 907 ntBASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Nkx3-1P97436 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Phf7-203ENSMUST00000226565 1971 ntBASIC14.5□□□□□ -0.09
Nkx3-1P97436 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Nkx3-1P97436 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Gm44771-201ENSMUST00000206975 626 ntBASIC14.49□□□□□ -0.09
Nkx3-1P97436 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Birc2-201ENSMUST00000054878 378 ntBASIC14.49□□□□□ -0.09
Nkx3-1P97436 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Nkx3-1P97436 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Nkx3-1P97436 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms