Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC18.8■□□□□ 0.6
Tpm1P58771 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Tpm1P58771 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC18.8■□□□□ 0.6
Tpm1P58771 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Tpm1P58771 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.79■□□□□ 0.6
Tpm1P58771 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC18.79■□□□□ 0.6
Tpm1P58771 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.79■□□□□ 0.6
Tpm1P58771 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tpm1P58771 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.79■□□□□ 0.6
Tpm1P58771 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.78■□□□□ 0.6
Tpm1P58771 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Tpm1P58771 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tpm1P58771 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Tpm1P58771 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Tpm1P58771 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.77■□□□□ 0.6
Tpm1P58771 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Tpm1P58771 Rab3c-203ENSMUST00000224180 967 ntBASIC18.77■□□□□ 0.6
Tpm1P58771 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Tpm1P58771 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Tpm1P58771 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Tpm1P58771 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Tpm1P58771 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.77■□□□□ 0.59
Tpm1P58771 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Tpm1P58771 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.76■□□□□ 0.59
Tpm1P58771 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Tpm1P58771 Gm26524-201ENSMUST00000192339 390 ntBASIC18.76■□□□□ 0.59
Tpm1P58771 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Tpm1P58771 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.76■□□□□ 0.59
Tpm1P58771 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Tpm1P58771 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.76■□□□□ 0.59
Tpm1P58771 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Tpm1P58771 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tpm1P58771 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Tpm1P58771 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Tpm1P58771 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Tpm1P58771 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
Tpm1P58771 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Tpm1P58771 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.75■□□□□ 0.59
Tpm1P58771 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Tpm1P58771 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Tpm1P58771 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Tpm1P58771 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms