Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 TRIM60P13-201ENST00000432350 1283 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC092106.1-201ENST00000444291 373 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC105399.1-202ENST00000447303 205 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 RPS23P1-201ENST00000491662 432 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC231760.1-201ENST00000498002 260 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AL139407.1-201ENST00000613826 1175 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 KYNUP3-201ENST00000574386 1341 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 CR382285.2-201ENST00000624662 1495 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 MT-RNR2-201ENST00000387347 1559 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC005261.6-201ENST00000623072 1387 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RPL23P2-201ENST00000320371 421 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 U8.4-201ENST00000363626 134 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AL607077.1-201ENST00000401718 499 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RNU6-564P-201ENST00000410983 104 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RN7SKP17-201ENST00000411242 351 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RNF10P1-201ENST00000418589 369 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AL590399.2-201ENST00000427536 309 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 FAM96AP1-201ENST00000430879 482 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RSL24D1P8-201ENST00000434442 492 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 OTX2P1-201ENST00000450956 354 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 MTND3P4-201ENST00000453537 303 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 RPS18P6-201ENST00000476880 458 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ATP5LP5-201ENST00000483050 299 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 ASNSP4-201ENST00000511103 447 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 OR4A46P-201ENST00000527255 933 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC022832.1-201ENST00000530718 645 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC084824.2-201ENST00000548906 345 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 MTND2P17-201ENST00000550281 688 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 SNRPGP1-201ENST00000553864 222 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 MIR4700-201ENST00000578311 74 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 DHFRP1-201ENST00000579682 559 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 H3F3BP2-201ENST00000583907 357 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 FAM60CP-201ENST00000591086 664 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC024940.4-201ENST00000605507 246 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 OR7M1P-201ENST00000608946 533 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC239803.2-201ENST00000610161 430 ntBASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC3Q9BQI4 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms