Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 RNA5SP438-201ENST00000516561 112 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 SCARNA6.1-201ENST00000516989 238 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC092953.2-201ENST00000608000 699 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC135803.1-201ENST00000608748 565 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC026124.2-201ENST00000621847 656 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AP006248.3-201ENST00000623580 594 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC021766.1-201ENST00000624404 741 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC008079.2-201ENST00000623543 20396 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 OR4F13P-202ENST00000560066 2054 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 HSPA8P14-201ENST00000552265 1805 ntBASIC4.83□□□□□ -1.64
NKX3-1Q99801 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
NKX3-1Q99801 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
NKX3-1Q99801 AC068446.1-201ENST00000556425 1549 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC011503.2-201ENST00000594230 1500 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 CDC27P2-201ENST00000425026 1922 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 PDZK1P1-202ENST00000425209 1350 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 RNA5SP187-201ENST00000384400 119 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 ST13P16-201ENST00000401760 781 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 BX284632.2-201ENST00000421091 399 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC073464.3-201ENST00000422564 712 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 TUBB4BP6-201ENST00000437576 479 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 ARL5AP3-201ENST00000439327 386 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL512605.1-202ENST00000441919 381 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL359955.2-201ENST00000445380 353 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL353718.1-201ENST00000451028 517 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 RNU6-319P-201ENST00000516025 108 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 RNA5SP271-201ENST00000516700 88 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 RNU6-889P-201ENST00000517189 103 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 IGLVIV-64-201ENST00000518581 301 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 OR4V1P-201ENST00000525394 1140 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AL356801.1-201ENST00000559320 294 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 MIMT1-201ENST00000597105 1050 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 QTRT1P1-201ENST00000604344 1078 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC100767.2-201ENST00000604840 693 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC138965.3-201ENST00000623875 498 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AP002371.2-201ENST00000624450 503 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC129915.3-201ENST00000634128 948 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.82□□□□□ -1.64
NKX3-1Q99801 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NKX3-1Q99801 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
NKX3-1Q99801 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
NKX3-1Q99801 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
NKX3-1Q99801 AC112198.2-201ENST00000426589 6996 ntBASIC4.81□□□□□ -1.64
NKX3-1Q99801 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 131.1 ms