Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 AC013429.2-201ENST00000418798 781 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 DSTNP5-201ENST00000427921 523 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 MRPL35P2-201ENST00000448009 511 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 OR8A2P-201ENST00000528631 952 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 RBM22P1-201ENST00000578589 1214 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 MIR4271-201ENST00000582451 67 ntBASIC5.58□□□□□ -1.52
CCDC42Q96M95 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC42Q96M95 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC42Q96M95 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AL672167.1-204ENST00000641875 3017 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC025574.1-201ENST00000554784 1653 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 RN7SKP74-201ENST00000362849 309 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 RNU1-146P-201ENST00000364015 165 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 U3.32-201ENST00000408116 212 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC073909.1-201ENST00000447112 999 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC074087.1-201ENST00000512059 724 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 MIR1273E-201ENST00000581165 102 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 MIR4472-2-201ENST00000582069 67 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 AP005262.1-201ENST00000582646 997 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 BNIP3P35-201ENST00000604530 490 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 BNIP3P41-202ENST00000616656 861 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 MIR6071-201ENST00000616741 78 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC037198.3-201ENST00000616754 526 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC244100.4-201ENST00000617747 388 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 AC074101.1-201ENST00000637861 241 ntBASIC5.57□□□□□ -1.52
CCDC42Q96M95 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC42Q96M95 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC42Q96M95 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 AC092747.4-201ENST00000620519 1861 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC42Q96M95 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.56□□□□□ -1.52
CCDC42Q96M95 RNA5SP90-201ENST00000364801 99 ntBASIC5.56□□□□□ -1.52
CCDC42Q96M95 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms