Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.11□□□□□ -1.59
SOX3P41225 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 SUGT1P3-202ENST00000604259 383 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AL162574.2-201ENST00000614618 657 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AC005840.5-201ENST00000619166 599 ntBASIC5.11□□□□□ -1.59
SOX3P41225 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.11□□□□□ -1.59
SOX3P41225 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
SOX3P41225 AL442128.2-201ENST00000620246 1824 ntBASIC5.11□□□□□ -1.59
SOX3P41225 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 AC092376.2-201ENST00000622621 4116 ntBASIC5.11□□□□□ -1.59
SOX3P41225 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SOX3P41225 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SOX3P41225 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.11□□□□□ -1.59
SOX3P41225 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 MT-RNR1-201ENST00000389680 954 ntBASIC5.1□□□□□ -1.59
SOX3P41225 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SOX3P41225 AC005522.1-201ENST00000395416 346 ntBASIC5.1□□□□□ -1.59
SOX3P41225 METTL5-204ENST00000409340 472 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 GTF3AP1-201ENST00000416942 1004 ntBASIC5.1□□□□□ -1.59
SOX3P41225 RNF10P1-201ENST00000418589 369 ntBASIC5.1□□□□□ -1.59
SOX3P41225 HMGN2P27-201ENST00000427352 270 ntBASIC5.1□□□□□ -1.59
SOX3P41225 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 MAPRE1P3-201ENST00000435438 796 ntBASIC5.1□□□□□ -1.59
SOX3P41225 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 AL500527.1-201ENST00000448532 255 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 RN7SL583P-201ENST00000475692 287 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AC074386.1-201ENST00000476560 767 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AC135999.1-201ENST00000478962 479 ntBASIC5.1□□□□□ -1.59
SOX3P41225 ATP5LP5-201ENST00000483050 299 ntBASIC5.1□□□□□ -1.59
SOX3P41225 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC5.1□□□□□ -1.59
SOX3P41225 CUL4AP1-201ENST00000514750 1863 ntBASIC5.1□□□□□ -1.59
SOX3P41225 CIR1P2-201ENST00000514821 1342 ntBASIC5.1□□□□□ -1.59
SOX3P41225 RN7SKP253-201ENST00000516424 309 ntBASIC5.1□□□□□ -1.59
SOX3P41225 RNA5SP230-201ENST00000517039 122 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.1□□□□□ -1.59
SOX3P41225 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.1□□□□□ -1.59
SOX3P41225 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.1□□□□□ -1.59
SOX3P41225 OR7M1P-201ENST00000608946 533 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AL139124.1-201ENST00000609123 421 ntBASIC5.1□□□□□ -1.59
SOX3P41225 AL359513.1-201ENST00000614364 557 ntBASIC5.1□□□□□ -1.59
SOX3P41225 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.1□□□□□ -1.59
SOX3P41225 AL360270.2-201ENST00000562952 5985 ntBASIC5.1□□□□□ -1.59
SOX3P41225 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SOX3P41225 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SOX3P41225 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.09□□□□□ -1.59
SOX3P41225 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
SOX3P41225 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.09□□□□□ -1.59
SOX3P41225 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.09□□□□□ -1.59
SOX3P41225 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SOX3P41225 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
SOX3P41225 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
SOX3P41225 RNU6-386P-201ENST00000362650 107 ntBASIC5.09□□□□□ -1.59
SOX3P41225 NPM1P38-201ENST00000403835 865 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AL139039.2-201ENST00000407436 479 ntBASIC5.09□□□□□ -1.59
SOX3P41225 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.09□□□□□ -1.59
SOX3P41225 RPSAP35-201ENST00000413753 818 ntBASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms