Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RPS17P11-201ENST00000474297 293 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC026956.1-201ENST00000558741 396 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ANP32BP3-201ENST00000559213 706 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC090651.1-201ENST00000567865 634 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 CBX3P2-202ENST00000583365 535 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 RSL24D1P11-201ENST00000591045 491 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AL606834.2-201ENST00000602954 668 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AL049840.6-201ENST00000604583 345 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC007671.1-201ENST00000616957 830 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 MIR6849-201ENST00000618543 69 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 MIR1322-201ENST00000638013 71 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AC232271.1-201ENST00000602455 2715 ntBASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC7.29□□□□□ -1.24
CCDC39Q9UFE4 ZNF528-201ENST00000360465 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 SAGE3P-201ENST00000619800 1635 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RNU6-468P-201ENST00000384003 109 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 Y_RNA.516-201ENST00000384541 124 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 Y_RNA.517-201ENST00000384551 106 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 SNORA7A-201ENST00000384765 139 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AL391419.1-201ENST00000398901 1275 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RPL12P23-201ENST00000405880 490 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 FIGN-202ENST00000409634 746 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 SNORA79B-201ENST00000410557 148 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RNA5SP155-201ENST00000411154 129 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC011233.1-201ENST00000422812 283 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 RPS7P2-201ENST00000435134 607 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC092106.2-201ENST00000436597 487 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 ARF4P4-201ENST00000439608 520 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 DNAJA1P5-201ENST00000440278 943 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 GTF2IP14-201ENST00000441415 586 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 OR13K1P-201ENST00000444577 975 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 EPS15P1-201ENST00000448836 336 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 OSTCP1-201ENST00000455507 450 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC122714.1-201ENST00000502510 459 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 HMGN1P17-201ENST00000513734 295 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 ACTR3BP3-201ENST00000565577 979 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AL136363.2-201ENST00000604173 851 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AC079610.2-201ENST00000604818 690 ntBASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.24
CCDC39Q9UFE4 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC7.27□□□□□ -1.24
CCDC39Q9UFE4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC7.27□□□□□ -1.24
CCDC39Q9UFE4 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC7.27□□□□□ -1.25
CCDC39Q9UFE4 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms