Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 RNU4-44P-201ENST00000363050 141 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 RNU6-304P-201ENST00000364855 107 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AC093719.1-202ENST00000392735 373 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 EIF4A1P11-201ENST00000451239 222 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 SNORA43.3-201ENST00000517240 103 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AL049872.1-201ENST00000556323 322 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 DPPA2P4-201ENST00000563717 878 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AL513327.3-201ENST00000602618 469 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AP005431.1-201ENST00000618479 319 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 CU639417.4-201ENST00000623928 207 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 UGP2-232ENST00000640075 567 ntTSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 AC087516.1-201ENST00000561236 2428 ntBASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC7.36□□□□□ -1.23
CHMP4AQ9BY43 DDX18P3-201ENST00000404856 2007 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 RNU6-666P-201ENST00000363499 107 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AL512422.1-201ENST00000407033 553 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 RPL23AP18-201ENST00000416139 468 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 UBFD1P1-201ENST00000473259 814 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 RN7SL717P-201ENST00000478343 297 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 MYL6-213ENST00000549017 502 ntTSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC068714.1-201ENST00000559623 800 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 MIR4420-201ENST00000583944 77 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AC100814.1-201ENST00000606963 623 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 AL118496.1-201ENST00000440201 1812 ntBASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC7.35□□□□□ -1.23
CHMP4AQ9BY43 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP224-201ENST00000364140 325 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 RN7SKP69-201ENST00000365390 305 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 BMS1P3-201ENST00000372011 932 ntBASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC7.34□□□□□ -1.23
CHMP4AQ9BY43 MIR320B1-201ENST00000390209 79 ntBASIC7.34□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms