Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 OR5T3-201ENST00000303059 1023 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 RNA5SP335-201ENST00000363817 110 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AL136116.2-201ENST00000404020 785 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 RPL23AP27-201ENST00000415161 451 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 METTL15P3-201ENST00000415522 1221 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC092651.1-201ENST00000426110 312 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 KRT8P51-201ENST00000438938 274 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 BX679664.2-201ENST00000439282 283 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC245047.2-201ENST00000441060 530 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC104849.1-201ENST00000462623 405 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 RN7SL222P-201ENST00000476452 299 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 PDCL3P4-201ENST00000489621 720 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 RPEP1-201ENST00000504507 658 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC026782.2-201ENST00000510845 636 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 MTND2P31-201ENST00000512602 616 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC060780.2-201ENST00000589047 198 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 GMCL1P2-201ENST00000605230 823 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 BX322635.1-201ENST00000605804 496 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AL445222.1-201ENST00000607259 628 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AL356752.1-201ENST00000615844 593 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AP002505.2-201ENST00000623585 696 ntBASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC3Q9BQI4 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC005005.4-201ENST00000623789 16698 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 RN7SKP213-201ENST00000410746 298 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 DPPA2P2-201ENST00000418220 897 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 REREP1Y-201ENST00000422655 198 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 REREP2Y-201ENST00000439103 200 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 MTND2P3-201ENST00000452458 470 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 RPL31P53-201ENST00000457065 348 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 RPSAP50-201ENST00000481955 852 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC004453.1-201ENST00000487895 408 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 RN7SL808P-201ENST00000496066 299 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 BLZF2P-201ENST00000553776 1130 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC016839.1-201ENST00000578162 867 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC126915.2-201ENST00000610957 190 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 WBP1LP8-201ENST00000617401 327 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AL590410.1-201ENST00000617925 333 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AL118508.4-201ENST00000624142 1176 ntBASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC3Q9BQI4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AP001284.1-201ENST00000528393 2118 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AC007938.2-201ENST00000604666 2634 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 RNU1-136P-201ENST00000384181 164 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AL009179.1-201ENST00000406085 265 ntBASIC5.36□□□□□ -1.55
CCDC3Q9BQI4 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms