Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC023490.2-201ENST00000359859 470 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 RN7SKP6-201ENST00000364795 319 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 HYALP1-201ENST00000417674 1279 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC013470.3-201ENST00000420252 1194 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 DSTNP5-201ENST00000427921 523 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 UBE2V2P1-201ENST00000434717 398 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 BTG3P1-201ENST00000435859 716 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 OR6D1P-201ENST00000436165 939 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 RPL5P25-201ENST00000441148 775 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC092106.1-201ENST00000444291 373 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 HMGN1P2-201ENST00000445197 310 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AL591623.2-201ENST00000449978 222 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AL445665.1-202ENST00000452436 324 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC011476.1-201ENST00000466725 307 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 IGBP1P4-201ENST00000503202 879 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 MORF4L2P1-201ENST00000503761 858 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC006499.4-201ENST00000510947 694 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 HMGN1P9-201ENST00000515212 298 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 OR11H3P-201ENST00000554547 982 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AP000769.2-201ENST00000602344 396 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AP005431.1-201ENST00000618479 319 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC135068.5-201ENST00000624197 983 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC129915.3-201ENST00000634128 948 ntBASIC5.46□□□□□ -1.54
VPS39Q96JC1 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
VPS39Q96JC1 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS39Q96JC1 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS39Q96JC1 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS39Q96JC1 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 OR7E25P-201ENST00000344844 931 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 RNA5SP241-201ENST00000391326 114 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 HMGN1P20-201ENST00000411849 300 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC016772.1-201ENST00000444170 1261 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC105918.1-201ENST00000474399 838 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AL671862.1-201ENST00000515851 349 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 CDC42P3-201ENST00000518493 633 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 RN7SL290P-201ENST00000578661 300 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 AP005403.1-201ENST00000579720 229 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC005726.4-201ENST00000582858 458 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC006363.1-201ENST00000603806 463 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 PPATP2-201ENST00000605635 508 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AC008691.1-209ENST00000642094 814 ntBASIC5.45□□□□□ -1.54
VPS39Q96JC1 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS39Q96JC1 AL078621.3-201ENST00000623707 2042 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms