Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC011453.2-201ENST00000603737 729 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC022001.1-201ENST00000605193 268 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC068276.1-201ENST00000605793 379 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 AC007684.1-201ENST00000609671 477 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 AC009120.7-201ENST00000623452 780 ntBASIC6.39□□□□□ -1.39
RNF4P78317 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 AC099654.12-201ENST00000639868 649 ntBASIC6.39□□□□□ -1.39
RNF4P78317 LINC01739-205ENST00000641890 573 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC099063.3-201ENST00000642066 185 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC015871.3-201ENST00000618835 2261 ntBASIC6.39□□□□□ -1.39
RNF4P78317 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC6.38□□□□□ -1.39
RNF4P78317 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
RNF4P78317 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 Y_RNA.311-201ENST00000365068 96 ntBASIC6.38□□□□□ -1.39
RNF4P78317 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 PPIAP26-201ENST00000377951 522 ntBASIC6.38□□□□□ -1.39
RNF4P78317 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
RNF4P78317 RPL9P21-201ENST00000392269 505 ntBASIC6.38□□□□□ -1.39
RNF4P78317 MTND4LP20-201ENST00000402379 270 ntBASIC6.38□□□□□ -1.39
RNF4P78317 RPS27AP11-201ENST00000402798 447 ntBASIC6.38□□□□□ -1.39
RNF4P78317 RN7SKP91-201ENST00000410852 288 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC092745.2-202ENST00000411880 369 ntBASIC6.38□□□□□ -1.39
RNF4P78317 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 FNDC3CP-201ENST00000420795 1155 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AL034379.1-201ENST00000423216 253 ntBASIC6.38□□□□□ -1.39
RNF4P78317 DPY19L1P2-201ENST00000426647 915 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 ARL6IP1P2-201ENST00000431356 563 ntBASIC6.38□□□□□ -1.39
RNF4P78317 RPS25P9-201ENST00000435591 252 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC241584.1-201ENST00000438469 1241 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC093155.1-201ENST00000440164 826 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 AL591363.1-201ENST00000450091 483 ntBASIC6.38□□□□□ -1.39
RNF4P78317 RPL7AP71-201ENST00000451120 739 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.38□□□□□ -1.39
RNF4P78317 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 RN7SL372P-201ENST00000461982 298 ntBASIC6.38□□□□□ -1.39
RNF4P78317 UOX-201ENST00000471089 899 ntBASIC6.38□□□□□ -1.39
RNF4P78317 RPS7P6-201ENST00000485777 579 ntBASIC6.38□□□□□ -1.39
RNF4P78317 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.38□□□□□ -1.39
RNF4P78317 AC026826.1-201ENST00000493002 361 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 AP005902.2-201ENST00000518393 307 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC025881.1-201ENST00000518851 512 ntBASIC6.38□□□□□ -1.39
RNF4P78317 IGJP1-201ENST00000522682 475 ntBASIC6.38□□□□□ -1.39
RNF4P78317 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 GTF2IP11-201ENST00000526931 420 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 ACER3-213ENST00000533873 929 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 WBP2NL-210ENST00000543212 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 AL137230.1-202ENST00000553996 420 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 AC018767.3-201ENST00000564185 481 ntTSL 3 BASIC6.38□□□□□ -1.39
RNF4P78317 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 AL365181.4-201ENST00000609800 547 ntBASIC6.38□□□□□ -1.39
RNF4P78317 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC6.38□□□□□ -1.39
RNF4P78317 AC012414.7-202ENST00000622705 1090 ntBASIC6.38□□□□□ -1.39
RNF4P78317 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.38□□□□□ -1.39
RNF4P78317 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC6.38□□□□□ -1.39
RNF4P78317 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.38□□□□□ -1.39
RNF4P78317 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
RNF4P78317 AC106872.5-201ENST00000508856 1416 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms