Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 AC003985.2-201ENST00000562268 1669 ntBASIC5.91□□□□□ -1.46
MSX2P35548 EEF1A1P16-201ENST00000325349 1414 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AL390237.1-201ENST00000404226 1415 ntBASIC5.91□□□□□ -1.46
MSX2P35548 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 AP002512.4-202ENST00000641599 4530 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC011503.2-201ENST00000594230 1500 ntBASIC5.91□□□□□ -1.46
MSX2P35548 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 MIR187-201ENST00000385062 109 ntBASIC5.91□□□□□ -1.46
MSX2P35548 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 SNORA11D-201ENST00000408548 128 ntBASIC5.91□□□□□ -1.46
MSX2P35548 SNORA11E-201ENST00000408778 128 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC092638.1-201ENST00000411966 1275 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AF274854.1-201ENST00000413236 615 ntBASIC5.91□□□□□ -1.46
MSX2P35548 MEAF6P1-201ENST00000416092 327 ntBASIC5.91□□□□□ -1.46
MSX2P35548 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 AC098826.1-201ENST00000433943 471 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AL731534.1-201ENST00000434711 269 ntBASIC5.91□□□□□ -1.46
MSX2P35548 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 AL138787.1-202ENST00000437804 898 ntBASIC5.91□□□□□ -1.46
MSX2P35548 MTND5P2-201ENST00000442927 1142 ntBASIC5.91□□□□□ -1.46
MSX2P35548 RPL5P10-201ENST00000445207 894 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 RPL12P26-201ENST00000452430 487 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC234781.3-201ENST00000452540 973 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 RNU7-125P-201ENST00000458760 62 ntBASIC5.91□□□□□ -1.46
MSX2P35548 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 SUMO1P1-201ENST00000497904 306 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 AC116353.3-201ENST00000511215 249 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 RNA5SP96-201ENST00000516041 107 ntBASIC5.91□□□□□ -1.46
MSX2P35548 CARSP2-201ENST00000520688 277 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 ACER3-213ENST00000533873 929 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 AC007115.1-201ENST00000546853 234 ntBASIC5.91□□□□□ -1.46
MSX2P35548 GNG2-203ENST00000553432 577 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 NPM1P42-201ENST00000560329 862 ntBASIC5.91□□□□□ -1.46
MSX2P35548 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.91□□□□□ -1.46
MSX2P35548 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC5.91□□□□□ -1.46
MSX2P35548 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 AC073046.2-201ENST00000604756 527 ntBASIC5.91□□□□□ -1.46
MSX2P35548 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.91□□□□□ -1.46
MSX2P35548 AP003392.5-201ENST00000607857 415 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC013468.1-201ENST00000608680 598 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC097467.3-215ENST00000609486 793 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 AC097467.3-214ENST00000610249 843 ntTSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 AC007347.2-201ENST00000623044 180 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AC139713.2-210ENST00000641741 992 ntBASIC5.91□□□□□ -1.46
MSX2P35548 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
MSX2P35548 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 SAMMSON-210ENST00000641260 1308 ntBASIC5.91□□□□□ -1.46
MSX2P35548 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 PKIB-207ENST00000392491 1379 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
MSX2P35548 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.91□□□□□ -1.46
MSX2P35548 EEF1A1P28-201ENST00000450915 1403 ntBASIC5.91□□□□□ -1.46
MSX2P35548 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
MSX2P35548 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC5.9□□□□□ -1.46
MSX2P35548 ECM1P2-201ENST00000503354 1577 ntBASIC5.9□□□□□ -1.46
MSX2P35548 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.46
MSX2P35548 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms