Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.68□□□□□ -1.66
USF1P22415 AC009852.2-201ENST00000567898 485 ntBASIC4.68□□□□□ -1.66
USF1P22415 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 AC006272.2-201ENST00000594725 163 ntBASIC4.68□□□□□ -1.66
USF1P22415 HIRAP1-201ENST00000605318 787 ntBASIC4.68□□□□□ -1.66
USF1P22415 AL136295.6-201ENST00000610486 658 ntBASIC4.68□□□□□ -1.66
USF1P22415 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 AL603750.1-201ENST00000624216 1717 ntBASIC4.68□□□□□ -1.66
USF1P22415 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.68□□□□□ -1.66
USF1P22415 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
USF1P22415 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.68□□□□□ -1.66
USF1P22415 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
USF1P22415 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
USF1P22415 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 SNORA5.1-201ENST00000384275 131 ntBASIC4.67□□□□□ -1.66
USF1P22415 MIR130A-201ENST00000385274 89 ntBASIC4.67□□□□□ -1.66
USF1P22415 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 RN7SL826P-201ENST00000479724 288 ntBASIC4.67□□□□□ -1.66
USF1P22415 AC008953.1-201ENST00000497334 318 ntBASIC4.67□□□□□ -1.66
USF1P22415 PGAM1P13-201ENST00000507497 754 ntBASIC4.67□□□□□ -1.66
USF1P22415 FTH1P11-201ENST00000517577 551 ntBASIC4.67□□□□□ -1.66
USF1P22415 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 HSPE1P2-201ENST00000554777 306 ntBASIC4.67□□□□□ -1.66
USF1P22415 AC019322.1-201ENST00000571869 389 ntBASIC4.67□□□□□ -1.66
USF1P22415 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 AL118522.2-201ENST00000616045 615 ntBASIC4.67□□□□□ -1.66
USF1P22415 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.67□□□□□ -1.66
USF1P22415 AL589935.2-201ENST00000616471 1231 ntBASIC4.67□□□□□ -1.66
USF1P22415 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.67□□□□□ -1.66
USF1P22415 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USF1P22415 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.67□□□□□ -1.66
USF1P22415 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.67□□□□□ -1.66
USF1P22415 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC4.66□□□□□ -1.66
USF1P22415 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 ZNF733P-202ENST00000444809 1573 ntBASIC4.66□□□□□ -1.66
USF1P22415 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC4.66□□□□□ -1.66
USF1P22415 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.66□□□□□ -1.66
USF1P22415 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
USF1P22415 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USF1P22415 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
USF1P22415 RNA5SP183-201ENST00000362452 119 ntBASIC4.66□□□□□ -1.66
USF1P22415 RNU6-249P-201ENST00000363016 102 ntBASIC4.66□□□□□ -1.66
USF1P22415 RNA5SP91-201ENST00000390902 119 ntBASIC4.66□□□□□ -1.66
USF1P22415 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.66□□□□□ -1.66
USF1P22415 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.66□□□□□ -1.66
USF1P22415 AL158827.1-201ENST00000416300 391 ntBASIC4.66□□□□□ -1.66
USF1P22415 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.66□□□□□ -1.66
USF1P22415 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.66□□□□□ -1.66
USF1P22415 CEACAMP7-201ENST00000444105 496 ntBASIC4.66□□□□□ -1.66
USF1P22415 FAR2P1-206ENST00000449736 709 ntBASIC4.66□□□□□ -1.66
USF1P22415 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.66□□□□□ -1.66
USF1P22415 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.66□□□□□ -1.66
USF1P22415 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.66□□□□□ -1.66
USF1P22415 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC4.66□□□□□ -1.66
USF1P22415 RPS4XP12-201ENST00000461747 709 ntBASIC4.66□□□□□ -1.66
USF1P22415 RPSAP50-201ENST00000481955 852 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms