Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 RN7SL329P-201ENST00000467740 299 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AC023245.1-201ENST00000468501 517 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.74□□□□□ -1.33
COL6A1P12109 OR56A7P-201ENST00000524865 941 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AP000662.1-201ENST00000530952 487 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AL121579.2-201ENST00000555466 590 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC009097.3-201ENST00000563557 1018 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 MIR5095-201ENST00000578844 88 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 LSM1P2-201ENST00000604911 322 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC015922.4-201ENST00000612568 690 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC079298.2-201ENST00000623885 459 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 METTL8-218ENST00000638989 876 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 METTL8-219ENST00000640734 726 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL6A1P12109 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL6A1P12109 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
COL6A1P12109 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 AC005225.5-201ENST00000623547 2225 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AL161912.4-201ENST00000623889 2468 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
COL6A1P12109 PDZK1P1-202ENST00000425209 1350 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC087565.3-202ENST00000642085 1603 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 RNU1-24P-201ENST00000364285 165 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RNA5SP478-201ENST00000364657 115 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AC016739.1-201ENST00000405359 345 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 GLUD1P9-201ENST00000420997 1173 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 HIGD1AP4-201ENST00000430194 280 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 HMGB3P10-201ENST00000434734 572 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC6.73□□□□□ -1.33
COL6A1P12109 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.73□□□□□ -1.33
COL6A1P12109 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC6.73□□□□□ -1.33
COL6A1P12109 AP002345.1-201ENST00000456493 928 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC107015.1-201ENST00000466902 747 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC004815.1-201ENST00000484185 331 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RN7SL205P-201ENST00000490174 284 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RN7SL57P-201ENST00000493687 290 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 ASNSP4-201ENST00000511103 447 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 SUMO2P7-201ENST00000511179 285 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 Y_RNA.655-201ENST00000515919 96 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RNA5SP92-201ENST00000516437 110 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 AL356057.1-201ENST00000533798 831 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AC092865.1-201ENST00000544395 1023 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 EIF1P5-201ENST00000585002 234 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 AL592494.3-201ENST00000609485 464 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RN7SL544P-201ENST00000617232 284 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 RN7SL763P-201ENST00000620922 284 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC6.73□□□□□ -1.33
COL6A1P12109 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 MAPK10-344ENST00000641718 3746 ntBASIC6.73□□□□□ -1.33
COL6A1P12109 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 ING3-204ENST00000431467 1447 ntTSL 2 BASIC6.73□□□□□ -1.33
COL6A1P12109 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL6A1P12109 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms