Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 AL136146.1-201ENST00000529830 1667 ntBASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 CDY2B-201ENST00000382867 1961 ntAPPRIS ALT1 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
LIMD1Q9UGP4 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 RIOK2-201ENST00000283109 3922 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 GABRP-203ENST00000518525 3576 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 ODF2-220ENST00000604420 3030 ntTSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 GCNA-202ENST00000373696 2791 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 USP13-203ENST00000496897 2747 ntTSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC026464.2-201ENST00000567834 2421 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 PPP2R5C-218ENST00000556260 2013 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC107419.1-201ENST00000422048 1879 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 RBMX2P2-201ENST00000257020 946 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 Y_RNA.86-201ENST00000363020 111 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL590290.1-201ENST00000405336 380 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL450338.1-201ENST00000407987 512 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 SNORA11.3-201ENST00000408471 128 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL136133.1-201ENST00000413694 376 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MTND3P17-201ENST00000416968 344 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 RPL24P2-201ENST00000421023 475 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 FAM183DP-201ENST00000421987 399 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 USP9YP36-201ENST00000424581 829 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL158073.1-201ENST00000426848 1104 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 NPM1P34-201ENST00000428821 893 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 CACYBPP1-201ENST00000438592 684 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL356121.1-201ENST00000442911 156 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 NIPA2P5-201ENST00000452282 464 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AL513533.1-201ENST00000453728 415 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 Z82190.1-201ENST00000454534 490 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC019084.1-201ENST00000457337 432 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 RPL7AP52-201ENST00000458096 790 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MEMO1P3-201ENST00000459811 302 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 RN7SL836P-201ENST00000476140 296 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC098583.1-201ENST00000480875 255 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC095059.2-201ENST00000510601 933 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC010486.1-201ENST00000511793 424 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MTND6P19-201ENST00000519399 524 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 NDUFA3P2-201ENST00000531434 232 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 OR7E161P-201ENST00000533722 967 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC005387.1-201ENST00000597837 352 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC097468.3-201ENST00000607956 456 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 SNORA11.6-201ENST00000619030 128 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 uc_338.37-201ENST00000620113 186 ntBASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
LIMD1Q9UGP4 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC7.9□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms