Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
RSPO3Q9BXY4 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 TMSB4XP4-201ENST00000323496 618 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 RNU1-19P-201ENST00000363306 165 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 PEX12P1-201ENST00000400284 1048 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 U3.32-201ENST00000408116 212 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 DNAJB5P1-201ENST00000454004 806 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC245028.2-201ENST00000458673 253 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC023141.9-201ENST00000458734 412 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC109481.1-201ENST00000509173 282 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 SCARNA16.4-201ENST00000516956 187 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC027026.1-201ENST00000532323 742 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC126177.5-201ENST00000549599 178 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC015720.2-201ENST00000567709 334 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AP005432.2-201ENST00000608162 586 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AL450345.1-202ENST00000605741 3881 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 TRIM51GP-201ENST00000534741 1350 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
RSPO3Q9BXY4 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RN7SKP124-201ENST00000364730 341 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RPL6P21-201ENST00000418672 846 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 EI24P4-201ENST00000423683 1078 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 DSTNP5-201ENST00000427921 523 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RN7SL629P-201ENST00000489622 285 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RPS24P16-201ENST00000497294 392 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RPEP1-201ENST00000504507 658 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 ENPP7P11-201ENST00000505915 627 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RNU6-941P-201ENST00000516346 108 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 NMNAT1P5-201ENST00000559657 841 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 RPL10P14-201ENST00000565265 298 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC008536.1-201ENST00000602872 669 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC104695.2-201ENST00000605056 775 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC099654.11-201ENST00000638857 294 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 AC023421.1-201ENST00000590535 1785 ntBASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.85□□□□□ -1.63
RSPO3Q9BXY4 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms