Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 MIR421-201ENST00000365696 85 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL096711.1-201ENST00000404780 554 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC016739.1-201ENST00000405359 345 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 OR13Z1P-201ENST00000416141 834 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 BX284632.2-201ENST00000421091 399 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL590609.2-201ENST00000421430 368 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC079807.1-201ENST00000429993 481 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 VN1R110P-201ENST00000438988 971 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 RPL12P11-201ENST00000439970 501 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL512605.1-202ENST00000441919 381 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 MED28P3-201ENST00000444288 531 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL359955.2-201ENST00000445380 353 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL627224.1-201ENST00000448334 444 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 MORF4L1P4-201ENST00000450245 976 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 RN7SL269P-201ENST00000467795 305 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC008629.2-201ENST00000503783 483 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC021087.2-201ENST00000504656 1203 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 RNA5SP438-201ENST00000516561 112 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 ZNF322P1-201ENST00000568013 1209 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 MIR4776-2-201ENST00000580204 80 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 MIR4310-201ENST00000582950 57 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC010503.3-201ENST00000594355 540 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AP004372.1-201ENST00000604842 844 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AL021918.2-201ENST00000613415 194 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC129915.3-201ENST00000634128 948 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC103703.1-201ENST00000634783 663 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC027088.4-201ENST00000611559 1947 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 THAP12P9-201ENST00000503971 2360 ntBASIC5.56□□□□□ -1.52
VMP1Q96GC9 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.56□□□□□ -1.52
VMP1Q96GC9 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC092079.1-201ENST00000558620 1985 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VMP1Q96GC9 SELENOWP1-201ENST00000322792 252 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC093719.1-202ENST00000392735 373 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 RN7SKP222-201ENST00000410651 315 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 KIF4CP-201ENST00000422742 1279 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC099677.3-201ENST00000427081 395 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AL445928.1-201ENST00000435545 222 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AL663074.2-201ENST00000440621 479 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC144530.1-201ENST00000452862 555 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 HLA-DPA3-207ENST00000454398 229 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC008410.1-201ENST00000483777 339 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 GLUD1P3-202ENST00000508551 200 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC090568.1-201ENST00000509499 856 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC108471.1-201ENST00000513977 287 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 RNA5SP271-201ENST00000516700 88 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 TMEM97P2-201ENST00000517841 403 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 NANOGNBP2-201ENST00000544753 553 ntBASIC5.55□□□□□ -1.52
VMP1Q96GC9 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.55□□□□□ -1.52
VMP1Q96GC9 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms