Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RN7SKP288-201ENST00000516227 268 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 RN7SKP66-201ENST00000516681 231 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC090607.5-201ENST00000615692 224 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC009704.2-201ENST00000618739 483 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC012618.3-205ENST00000637896 1496 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 RNA5SP123-201ENST00000363244 119 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC006466.1-201ENST00000438721 289 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 RSU1P1-201ENST00000453416 441 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 NDUFA5P9-201ENST00000472609 340 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 BNIP3P22-201ENST00000593399 556 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AL592293.2-201ENST00000422292 996 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC104837.2-201ENST00000427236 424 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 IGHVIII-47-1-201ENST00000518187 331 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 IRF5P1-201ENST00000504852 2164 ntBASIC1.65□□□□□ -2.15
SYNE1Q8NF91 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 MR1-209ENST00000617803 7584 ntTSL 5 BASIC1.65□□□□□ -2.15
SYNE1Q8NF91 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 COX6B1P1-201ENST00000415962 213 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC007161.1-204ENST00000423039 460 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RPL7P61-201ENST00000451721 751 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 RPL5P22-201ENST00000480199 884 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SLC25A15P5-201ENST00000508033 253 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR4H6P-201ENST00000563771 921 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LARS-201ENST00000274562 2213 ntTSL 2 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SNORA62-201ENST00000365493 153 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL731534.1-201ENST00000434711 269 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AL161722.1-201ENST00000446972 1032 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC090638.1-201ENST00000498296 909 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 MIR4646-201ENST00000580775 63 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC087283.1-201ENST00000604029 1074 ntBASIC1.64□□□□□ -2.15
SYNE1Q8NF91 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 GHR-202ENST00000357703 4316 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 GHR-213ENST00000622294 4312 ntTSL 5 BASIC1.64□□□□□ -2.15
SYNE1Q8NF91 AC092747.4-201ENST00000620519 1861 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms