Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIM2P55344 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIM2P55344 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.05□□□□□ -1.6
LIM2P55344 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIM2P55344 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
LIM2P55344 HSPA8P15-201ENST00000401676 786 ntBASIC5.05□□□□□ -1.6
LIM2P55344 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.05□□□□□ -1.6
LIM2P55344 RPL7AP49-201ENST00000429522 581 ntBASIC5.05□□□□□ -1.6
LIM2P55344 RPL7L1P9-201ENST00000431298 745 ntBASIC5.05□□□□□ -1.6
LIM2P55344 AL591438.1-201ENST00000433508 581 ntBASIC5.05□□□□□ -1.6
LIM2P55344 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.05□□□□□ -1.6
LIM2P55344 RPS11P7-201ENST00000442125 465 ntBASIC5.05□□□□□ -1.6
LIM2P55344 OR52Y1P-201ENST00000452418 828 ntBASIC5.05□□□□□ -1.6
LIM2P55344 AP000797.2-201ENST00000475768 606 ntBASIC5.05□□□□□ -1.6
LIM2P55344 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
LIM2P55344 CDC42P3-201ENST00000518493 633 ntBASIC5.05□□□□□ -1.6
LIM2P55344 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.05□□□□□ -1.6
LIM2P55344 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.05□□□□□ -1.6
LIM2P55344 RPL10P14-201ENST00000565265 298 ntBASIC5.05□□□□□ -1.6
LIM2P55344 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
LIM2P55344 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 AC074101.1-201ENST00000637861 241 ntBASIC5.05□□□□□ -1.6
LIM2P55344 CASC19-264ENST00000641912 1184 ntBASIC5.05□□□□□ -1.6
LIM2P55344 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.05□□□□□ -1.6
LIM2P55344 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIM2P55344 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
LIM2P55344 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
LIM2P55344 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 RNA5SP183-201ENST00000362452 119 ntBASIC5.04□□□□□ -1.6
LIM2P55344 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 RNU1-149P-201ENST00000390870 161 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC092642.1-201ENST00000392417 425 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AL391361.1-201ENST00000405580 489 ntBASIC5.04□□□□□ -1.6
LIM2P55344 RPL35AP24-201ENST00000413846 330 ntBASIC5.04□□□□□ -1.6
LIM2P55344 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 AC017078.1-201ENST00000416146 368 ntBASIC5.04□□□□□ -1.6
LIM2P55344 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 FAM96AP1-201ENST00000430879 482 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 AC104634.1-201ENST00000452720 462 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC011225.1-201ENST00000457751 369 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 RNU6-941P-201ENST00000516346 108 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 AC027026.1-201ENST00000532323 742 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 MIR4660-201ENST00000583549 74 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 AC005252.1-201ENST00000604518 1063 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC092944.2-201ENST00000605443 889 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AP000864.1-201ENST00000609424 650 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC022467.1-201ENST00000614738 749 ntBASIC5.04□□□□□ -1.6
LIM2P55344 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.04□□□□□ -1.6
LIM2P55344 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
LIM2P55344 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIM2P55344 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.04□□□□□ -1.6
LIM2P55344 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.03□□□□□ -1.6
LIM2P55344 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LIM2P55344 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms