Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 AL132640.2-201ENST00000559968 1698 ntBASIC5.58□□□□□ -1.52
COL4A4P53420 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 RPL18P10-201ENST00000425606 538 ntBASIC5.58□□□□□ -1.52
COL4A4P53420 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A4P53420 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A4P53420 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A4P53420 COX6B1P5-201ENST00000509843 249 ntBASIC5.58□□□□□ -1.52
COL4A4P53420 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A4P53420 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A4P53420 AP000919.1-201ENST00000582850 985 ntBASIC5.58□□□□□ -1.52
COL4A4P53420 AC003973.3-201ENST00000624863 2822 ntBASIC5.58□□□□□ -1.52
COL4A4P53420 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A4P53420 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A4P53420 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A4P53420 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A4P53420 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
COL4A4P53420 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 AL359955.1-201ENST00000455242 3275 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL4A4P53420 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A4P53420 RNA5SP453-201ENST00000362503 119 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
COL4A4P53420 RSL24D1P6-201ENST00000426934 401 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 RPL12P17-201ENST00000432393 498 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A4P53420 RN7SL197P-201ENST00000466981 299 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.57□□□□□ -1.52
COL4A4P53420 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A4P53420 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.57□□□□□ -1.52
COL4A4P53420 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.57□□□□□ -1.52
COL4A4P53420 AC005377.1-201ENST00000605126 456 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL4A4P53420 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
COL4A4P53420 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.57□□□□□ -1.52
COL4A4P53420 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A4P53420 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.57□□□□□ -1.52
COL4A4P53420 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A4P53420 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A4P53420 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 SNORA70.2-201ENST00000364506 135 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 RNU2-50P-201ENST00000410494 143 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 GJA6P-201ENST00000415117 1042 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 CHEK2P3-201ENST00000416118 248 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC5.56□□□□□ -1.52
COL4A4P53420 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 KNOP1P3-201ENST00000446933 426 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 RPS24P16-201ENST00000497294 392 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 RPS4XP20-201ENST00000505751 772 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 GLUD1P3-202ENST00000508551 200 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AC034205.1-201ENST00000520621 638 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 OR7E128P-201ENST00000532736 1024 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AP006289.1-201ENST00000538089 277 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
COL4A4P53420 MTCYBP13-201ENST00000578634 1093 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 MIR1254-2-201ENST00000579553 63 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AC011487.3-201ENST00000593607 453 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 AL391358.1-201ENST00000605342 190 ntBASIC5.56□□□□□ -1.52
COL4A4P53420 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC5.56□□□□□ -1.52
COL4A4P53420 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
COL4A4P53420 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms