Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.49□□□□□ -1.53
HNF4AP41235 AC026616.1-201ENST00000523157 525 ntBASIC5.49□□□□□ -1.53
HNF4AP41235 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.49□□□□□ -1.53
HNF4AP41235 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.49□□□□□ -1.53
HNF4AP41235 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.49□□□□□ -1.53
HNF4AP41235 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.49□□□□□ -1.53
HNF4AP41235 AC010503.3-201ENST00000594355 540 ntBASIC5.49□□□□□ -1.53
HNF4AP41235 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.49□□□□□ -1.53
HNF4AP41235 MTCO2P22-201ENST00000603246 681 ntBASIC5.49□□□□□ -1.53
HNF4AP41235 AC006363.1-201ENST00000603806 463 ntBASIC5.49□□□□□ -1.53
HNF4AP41235 BNIP3P7-201ENST00000605641 516 ntBASIC5.49□□□□□ -1.53
HNF4AP41235 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.49□□□□□ -1.53
HNF4AP41235 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.49□□□□□ -1.53
HNF4AP41235 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
HNF4AP41235 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
HNF4AP41235 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.49□□□□□ -1.53
HNF4AP41235 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HNF4AP41235 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 OR4F13P-202ENST00000560066 2054 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 AL121886.1-201ENST00000358609 435 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 RNA5SP187-201ENST00000384400 119 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.48□□□□□ -1.53
HNF4AP41235 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 NENFP1-201ENST00000419476 466 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 AL022331.1-201ENST00000429025 477 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 GAPDHP34-201ENST00000432112 823 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 NPM1P18-201ENST00000434232 732 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC099670.2-201ENST00000435130 321 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 XKRYP6-201ENST00000440468 1116 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 XKRYP3-201ENST00000442113 1116 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 RPS23P9-201ENST00000448848 438 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AL591623.2-201ENST00000449978 222 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 LDHBP2-201ENST00000456969 1005 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.48□□□□□ -1.53
HNF4AP41235 AC021205.1-201ENST00000468797 348 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 RPSAP37-201ENST00000470913 821 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC096741.1-201ENST00000472250 846 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC022215.1-201ENST00000481770 362 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 OR4V1P-201ENST00000525394 1140 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.48□□□□□ -1.53
HNF4AP41235 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC5.48□□□□□ -1.53
HNF4AP41235 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 AC006272.2-201ENST00000594725 163 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC100767.2-201ENST00000604840 693 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC096553.1-201ENST00000605169 829 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 AC015982.1-201ENST00000608113 465 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 AP002967.1-201ENST00000624203 539 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.48□□□□□ -1.53
HNF4AP41235 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
HNF4AP41235 AC106872.5-201ENST00000508856 1416 ntBASIC5.48□□□□□ -1.53
HNF4AP41235 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HNF4AP41235 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HNF4AP41235 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.47□□□□□ -1.53
HNF4AP41235 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.47□□□□□ -1.53
HNF4AP41235 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
HNF4AP41235 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HNF4AP41235 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
HNF4AP41235 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HNF4AP41235 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HNF4AP41235 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
HNF4AP41235 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.47□□□□□ -1.53
HNF4AP41235 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
HNF4AP41235 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.47□□□□□ -1.53
HNF4AP41235 MIR7-1-201ENST00000384871 110 ntBASIC5.47□□□□□ -1.53
HNF4AP41235 AC005042.1-201ENST00000393397 800 ntBASIC5.47□□□□□ -1.53
HNF4AP41235 AL034374.1-201ENST00000406329 351 ntBASIC5.47□□□□□ -1.53
HNF4AP41235 RMRPP5-201ENST00000411156 267 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms