Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 OR9N1P-201ENST00000491296 333 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 RPL23AP53-201ENST00000521854 457 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AP003396.4-201ENST00000527574 265 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AP002373.2-201ENST00000541631 1060 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 DCN-210ENST00000547568 823 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 ATP5G2-205ENST00000549748 728 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 AL078601.3-201ENST00000573303 535 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC3.95□□□□□ -1.78
FOXA3P55318 AC090774.2-201ENST00000584708 322 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AC009027.1-201ENST00000604510 479 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 FAM27E4-201ENST00000605259 342 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 U91328.4-201ENST00000608919 517 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 AP001005.3-201ENST00000622049 129 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
FOXA3P55318 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 USP8-204ENST00000425032 3559 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 MRE11P1-201ENST00000464884 2127 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
FOXA3P55318 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
FOXA3P55318 AC093225.1-201ENST00000506867 1408 ntBASIC3.95□□□□□ -1.78
FOXA3P55318 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.95□□□□□ -1.78
FOXA3P55318 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 SCARNA15-201ENST00000607520 4325 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 RN7SKP6-201ENST00000364795 319 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RN7SKP292-201ENST00000365522 317 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RNA5SP487-201ENST00000410186 122 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RN7SKP125-201ENST00000410481 302 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC3.94□□□□□ -1.78
FOXA3P55318 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA3P55318 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA3P55318 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA3P55318 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA3P55318 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA3P55318 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC3.94□□□□□ -1.78
FOXA3P55318 HMGB1P7-201ENST00000450921 612 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 AL445433.1-201ENST00000457507 257 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AC079168.1-201ENST00000458741 345 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 FCRL2-205ENST00000469986 902 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 MTCO1P55-201ENST00000489829 745 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RN7SL193P-201ENST00000491708 276 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RN7SL447P-201ENST00000494711 245 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA3P55318 GUSBP9-201ENST00000510138 584 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 BTG4P1-201ENST00000510421 183 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC3.94□□□□□ -1.78
FOXA3P55318 IGKV3D-25-201ENST00000519599 235 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 MINCR-206ENST00000524335 499 ntTSL 2 BASIC3.94□□□□□ -1.78
FOXA3P55318 AP000648.1-201ENST00000529682 397 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 AC002519.2-203ENST00000567043 837 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AL162431.4-201ENST00000604674 411 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AC011626.1-201ENST00000604710 562 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 TAS2R6P-201ENST00000605022 826 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AL031601.1-201ENST00000605702 394 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 AC108359.1-201ENST00000616451 1211 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 MIR8069-1-201ENST00000616627 86 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 MIR8069-2-201ENST00000621412 86 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.94□□□□□ -1.78
FOXA3P55318 AC129915.3-201ENST00000634128 948 ntBASIC3.94□□□□□ -1.78
FOXA3P55318 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC3.94□□□□□ -1.78
FOXA3P55318 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
FOXA3P55318 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
FOXA3P55318 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC3.93□□□□□ -1.78
FOXA3P55318 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 SCN1A-220ENST00000641603 12506 ntBASIC3.93□□□□□ -1.78
FOXA3P55318 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
FOXA3P55318 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 AC139713.2-215ENST00000641428 5037 ntBASIC3.93□□□□□ -1.78
FOXA3P55318 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 TMSB4XP2-201ENST00000335179 210 ntBASIC3.93□□□□□ -1.78
FOXA3P55318 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC3.93□□□□□ -1.78
FOXA3P55318 MIR589-201ENST00000385238 99 ntBASIC3.93□□□□□ -1.78
FOXA3P55318 TRAV35-201ENST00000390462 330 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 130.6 ms