Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 C1D-202ENST00000407324 1379 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 METTL5-202ENST00000308099 629 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 RNU6-707P-201ENST00000364647 95 ntBASIC7□□□□□ -1.29
LIG3P49916 RNA5SP172-201ENST00000365061 118 ntBASIC7□□□□□ -1.29
LIG3P49916 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 RNU6-452P-201ENST00000384406 107 ntBASIC7□□□□□ -1.29
LIG3P49916 MT-TP-201ENST00000387461 68 ntBASIC7□□□□□ -1.29
LIG3P49916 RN7SKP148-201ENST00000410179 275 ntBASIC7□□□□□ -1.29
LIG3P49916 Y_RNA.604-201ENST00000410574 102 ntBASIC7□□□□□ -1.29
LIG3P49916 RNU6-920P-201ENST00000410926 92 ntBASIC7□□□□□ -1.29
LIG3P49916 AL663109.1-201ENST00000411498 844 ntBASIC7□□□□□ -1.29
LIG3P49916 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 MTND4LP11-201ENST00000422184 280 ntBASIC7□□□□□ -1.29
LIG3P49916 AL034379.1-201ENST00000423216 253 ntBASIC7□□□□□ -1.29
LIG3P49916 AL049610.1-201ENST00000423374 372 ntBASIC7□□□□□ -1.29
LIG3P49916 TMEM246-AS1-202ENST00000425734 466 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 AC018804.1-201ENST00000430381 618 ntBASIC7□□□□□ -1.29
LIG3P49916 MTATP6P13-201ENST00000438531 667 ntBASIC7□□□□□ -1.29
LIG3P49916 OR13K1P-201ENST00000444577 975 ntBASIC7□□□□□ -1.29
LIG3P49916 SEPHS1P4-201ENST00000446112 1176 ntBASIC7□□□□□ -1.29
LIG3P49916 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 RHEBP2-201ENST00000450289 600 ntBASIC7□□□□□ -1.29
LIG3P49916 AC010878.1-201ENST00000456500 1047 ntBASIC7□□□□□ -1.29
LIG3P49916 WBP1LP4-201ENST00000505043 344 ntBASIC7□□□□□ -1.29
LIG3P49916 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 LECT2-203ENST00000512872 762 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 CR383658.1-201ENST00000514609 734 ntBASIC7□□□□□ -1.29
LIG3P49916 RNU6-678P-201ENST00000516832 109 ntBASIC7□□□□□ -1.29
LIG3P49916 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 IGLC4-201ENST00000517690 248 ntBASIC7□□□□□ -1.29
LIG3P49916 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 CASC11-203ENST00000519071 791 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC7□□□□□ -1.29
LIG3P49916 IGLVV-66-201ENST00000523818 341 ntBASIC7□□□□□ -1.29
LIG3P49916 OR5AZ1P-201ENST00000527448 943 ntBASIC7□□□□□ -1.29
LIG3P49916 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC7□□□□□ -1.29
LIG3P49916 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AC026458.1-201ENST00000564330 438 ntBASIC7□□□□□ -1.29
LIG3P49916 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AC006262.2-201ENST00000599127 612 ntTSL 3 BASIC7□□□□□ -1.29
LIG3P49916 AC125494.3-201ENST00000602759 455 ntBASIC7□□□□□ -1.29
LIG3P49916 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 U1.41-201ENST00000617626 165 ntBASIC7□□□□□ -1.29
LIG3P49916 AC073968.1-201ENST00000618594 637 ntBASIC7□□□□□ -1.29
LIG3P49916 AL031667.3-201ENST00000620124 655 ntBASIC7□□□□□ -1.29
LIG3P49916 AC024595.1-201ENST00000623088 387 ntBASIC7□□□□□ -1.29
LIG3P49916 SNX18P10-201ENST00000625014 519 ntBASIC7□□□□□ -1.29
LIG3P49916 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AC140479.4-205ENST00000636339 820 ntBASIC7□□□□□ -1.29
LIG3P49916 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC7□□□□□ -1.29
LIG3P49916 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC7□□□□□ -1.29
LIG3P49916 AL359263.1-201ENST00000441188 2796 ntBASIC7□□□□□ -1.29
LIG3P49916 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 ZNF733P-202ENST00000444809 1573 ntBASIC6.99□□□□□ -1.29
LIG3P49916 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC6.99□□□□□ -1.29
LIG3P49916 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.99□□□□□ -1.29
LIG3P49916 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.99□□□□□ -1.29
LIG3P49916 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
LIG3P49916 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
LIG3P49916 RNU6-931P-201ENST00000363850 107 ntBASIC6.99□□□□□ -1.29
LIG3P49916 RNA5SP176-201ENST00000390956 110 ntBASIC6.99□□□□□ -1.29
LIG3P49916 AL136100.1-201ENST00000407696 330 ntBASIC6.99□□□□□ -1.29
LIG3P49916 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC6.99□□□□□ -1.29
LIG3P49916 AL713922.1-201ENST00000416477 747 ntBASIC6.99□□□□□ -1.29
LIG3P49916 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.99□□□□□ -1.29
LIG3P49916 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC6.99□□□□□ -1.29
LIG3P49916 AL022400.1-201ENST00000423946 935 ntBASIC6.99□□□□□ -1.29
LIG3P49916 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.99□□□□□ -1.29
LIG3P49916 NANOGP4-201ENST00000427230 913 ntBASIC6.99□□□□□ -1.29
LIG3P49916 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC6.99□□□□□ -1.29
LIG3P49916 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC6.99□□□□□ -1.29
LIG3P49916 AL590103.1-201ENST00000434488 307 ntBASIC6.99□□□□□ -1.29
LIG3P49916 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC6.99□□□□□ -1.29
LIG3P49916 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.99□□□□□ -1.29
LIG3P49916 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 160.4 ms