Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 SUMO2P14-201ENST00000604488 293 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 MIR1264-201ENST00000616374 69 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC129778.1-202ENST00000623812 261 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AL591379.1-207ENST00000635982 261 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AMYH02020865.1-205ENST00000636189 261 ntBASIC4.79□□□□□ -1.64
CDX1P47902 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 AL359091.1-201ENST00000449048 1734 ntBASIC4.79□□□□□ -1.64
CDX1P47902 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 CASC19-284ENST00000642142 1868 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AL158152.1-201ENST00000602652 1435 ntBASIC4.79□□□□□ -1.64
CDX1P47902 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC4.79□□□□□ -1.64
CDX1P47902 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC4.78□□□□□ -1.64
CDX1P47902 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 AF287957.1-201ENST00000607368 1595 ntBASIC4.78□□□□□ -1.64
CDX1P47902 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC4.78□□□□□ -1.64
CDX1P47902 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AC133552.1-201ENST00000569988 4007 ntBASIC4.78□□□□□ -1.64
CDX1P47902 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 CCNT2P1-201ENST00000423082 1315 ntBASIC4.78□□□□□ -1.64
CDX1P47902 EIF3EP1-201ENST00000433978 1316 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC117409.1-201ENST00000470499 1310 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AP001002.1-201ENST00000625148 1513 ntBASIC4.78□□□□□ -1.64
CDX1P47902 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
CDX1P47902 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 RN7SKP185-201ENST00000362813 326 ntBASIC4.78□□□□□ -1.64
CDX1P47902 Y_RNA.110-201ENST00000363220 99 ntBASIC4.78□□□□□ -1.64
CDX1P47902 RN7SKP145-201ENST00000363291 303 ntBASIC4.78□□□□□ -1.64
CDX1P47902 SNORA43.1-201ENST00000364863 140 ntBASIC4.78□□□□□ -1.64
CDX1P47902 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.78□□□□□ -1.64
CDX1P47902 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CDX1P47902 SNORA77.2-201ENST00000408571 112 ntBASIC4.78□□□□□ -1.64
CDX1P47902 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.78□□□□□ -1.64
CDX1P47902 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AC074367.1-201ENST00000438685 1125 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AL353662.1-201ENST00000439099 327 ntBASIC4.78□□□□□ -1.64
CDX1P47902 RPL12P11-201ENST00000439970 501 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 SUMO2P1-206ENST00000445436 284 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 TRBV5-2-201ENST00000489095 273 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AC010468.3-201ENST00000508225 458 ntBASIC4.78□□□□□ -1.64
CDX1P47902 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 RPS27AP18-201ENST00000515536 459 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 AC021269.1-201ENST00000526860 705 ntBASIC4.78□□□□□ -1.64
CDX1P47902 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC4.78□□□□□ -1.64
CDX1P47902 AC093014.1-201ENST00000548926 724 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 BICD1-206ENST00000551086 423 ntTSL 3 BASIC4.78□□□□□ -1.64
CDX1P47902 AL512310.9-201ENST00000553311 948 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC4.78□□□□□ -1.64
CDX1P47902 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC4.78□□□□□ -1.64
CDX1P47902 RPA2P1-201ENST00000556557 721 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AL049779.3-201ENST00000557141 606 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC090888.3-201ENST00000558917 509 ntBASIC4.78□□□□□ -1.64
CDX1P47902 CYCSP38-201ENST00000559840 322 ntBASIC4.78□□□□□ -1.64
CDX1P47902 CD24P2-201ENST00000565486 219 ntBASIC4.78□□□□□ -1.64
CDX1P47902 MIR4472-2-201ENST00000582069 67 ntBASIC4.78□□□□□ -1.64
CDX1P47902 MIR4310-201ENST00000582950 57 ntBASIC4.78□□□□□ -1.64
CDX1P47902 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.78□□□□□ -1.64
CDX1P47902 AL138895.2-201ENST00000603019 178 ntBASIC4.78□□□□□ -1.64
CDX1P47902 KATNBL1P5-201ENST00000605015 517 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC004775.1-201ENST00000607389 753 ntBASIC4.78□□□□□ -1.64
CDX1P47902 AC004801.6-201ENST00000616571 978 ntBASIC4.78□□□□□ -1.64
CDX1P47902 RFPL4AP6-201ENST00000616792 846 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms