Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 OR9K1P-201ENST00000326513 941 ntBASIC5.07□□□□□ -1.6
SDC1P18827 RN7SKP153-201ENST00000365026 316 ntBASIC5.07□□□□□ -1.6
SDC1P18827 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC5.07□□□□□ -1.6
SDC1P18827 AL133388.1-201ENST00000404509 287 ntBASIC5.07□□□□□ -1.6
SDC1P18827 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.07□□□□□ -1.6
SDC1P18827 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
SDC1P18827 MTND6P12-201ENST00000428247 522 ntBASIC5.07□□□□□ -1.6
SDC1P18827 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.07□□□□□ -1.6
SDC1P18827 AL390119.1-201ENST00000440329 312 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC064862.4-201ENST00000442180 334 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC073109.1-201ENST00000445066 978 ntBASIC5.07□□□□□ -1.6
SDC1P18827 RPL36AP39-201ENST00000445859 318 ntBASIC5.07□□□□□ -1.6
SDC1P18827 GAPDHP25-201ENST00000447061 1001 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 RN7SL423P-201ENST00000486202 304 ntBASIC5.07□□□□□ -1.6
SDC1P18827 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.07□□□□□ -1.6
SDC1P18827 AC074087.1-201ENST00000512059 724 ntBASIC5.07□□□□□ -1.6
SDC1P18827 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.07□□□□□ -1.6
SDC1P18827 AC020937.1-201ENST00000519677 1013 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC008676.3-201ENST00000521237 435 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC138832.1-201ENST00000522871 556 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC5.07□□□□□ -1.6
SDC1P18827 AC022884.2-201ENST00000578535 580 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 AC011626.1-201ENST00000604710 562 ntBASIC5.07□□□□□ -1.6
SDC1P18827 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.07□□□□□ -1.6
SDC1P18827 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SDC1P18827 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
SDC1P18827 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.07□□□□□ -1.6
SDC1P18827 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 AC023421.1-201ENST00000590535 1785 ntBASIC5.06□□□□□ -1.6
SDC1P18827 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 SMG1P7-201ENST00000565246 2704 ntBASIC5.06□□□□□ -1.6
SDC1P18827 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
SDC1P18827 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDC1P18827 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
SDC1P18827 MIR589-201ENST00000385238 99 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AL589994.1-201ENST00000404962 340 ntBASIC5.06□□□□□ -1.6
SDC1P18827 OR4K12P-201ENST00000406538 961 ntBASIC5.06□□□□□ -1.6
SDC1P18827 RNU2-18P-201ENST00000411224 162 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.06□□□□□ -1.6
SDC1P18827 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.06□□□□□ -1.6
SDC1P18827 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 UBE2V2P1-201ENST00000434717 398 ntBASIC5.06□□□□□ -1.6
SDC1P18827 RPL23AP19-201ENST00000436229 369 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.06□□□□□ -1.6
SDC1P18827 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.06□□□□□ -1.6
SDC1P18827 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 AC079168.1-201ENST00000458741 345 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AL133372.1-201ENST00000493565 745 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AC090638.1-201ENST00000498296 909 ntBASIC5.06□□□□□ -1.6
SDC1P18827 MYL12BP2-201ENST00000503948 512 ntBASIC5.06□□□□□ -1.6
SDC1P18827 SNORD116-30-201ENST00000516468 85 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.06□□□□□ -1.6
SDC1P18827 KCTD9P6-201ENST00000522306 950 ntBASIC5.06□□□□□ -1.6
SDC1P18827 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 YWHABP2-201ENST00000540201 713 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.06□□□□□ -1.6
SDC1P18827 BLZF2P-201ENST00000553776 1130 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 AC106730.2-201ENST00000566641 540 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AC015720.2-201ENST00000567709 334 ntBASIC5.06□□□□□ -1.6
SDC1P18827 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 AP005435.3-201ENST00000531260 3198 ntBASIC5.06□□□□□ -1.6
SDC1P18827 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDC1P18827 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDC1P18827 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 RNF19BPY-201ENST00000458209 1550 ntBASIC5.06□□□□□ -1.6
SDC1P18827 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SDC1P18827 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
SDC1P18827 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.06□□□□□ -1.6
SDC1P18827 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.06□□□□□ -1.6
SDC1P18827 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 AL929601.4-201ENST00000613011 1341 ntBASIC5.05□□□□□ -1.6
SDC1P18827 AC022417.1-201ENST00000624768 1303 ntBASIC5.05□□□□□ -1.6
SDC1P18827 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 AC073136.1-201ENST00000449426 2884 ntBASIC5.05□□□□□ -1.6
SDC1P18827 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SDC1P18827 AL450345.1-202ENST00000605741 3881 ntBASIC5.05□□□□□ -1.6
SDC1P18827 RNA5SP510-201ENST00000364697 99 ntBASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms