Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC093591.2-201ENST00000565254 3843 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CLEC4A-204ENST00000360500 597 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 RNU6-249P-201ENST00000363016 102 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 RNA5SP122-201ENST00000384457 108 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 GAPDHP42-201ENST00000406848 981 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 RNA5SP296-201ENST00000410523 111 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 RN7SKP286-201ENST00000410894 299 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 CTSL3P-202ENST00000412179 788 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 CDY17P-201ENST00000414121 1282 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 OR6E1P-201ENST00000414424 923 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 SDHDP6-201ENST00000414693 480 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 BMS1P17-202ENST00000416720 316 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL691447.1-201ENST00000419456 387 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL133173.1-201ENST00000423458 397 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 FMO7P-201ENST00000436045 768 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AL161636.2-201ENST00000445179 927 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 YWHAEP1-201ENST00000453697 763 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 LDHBP2-201ENST00000456969 1005 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 PPIAP19-201ENST00000486414 492 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CSNK1A1P3-201ENST00000504105 330 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 MTATP6P1-201ENST00000514057 681 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 RN7SKP5-201ENST00000517045 272 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC122688.1-201ENST00000541494 223 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 MRPS21P7-201ENST00000566937 238 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 AP003400.2-201ENST00000624036 666 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 AC008691.1-209ENST00000642094 814 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 THAP12P5-201ENST00000405864 2275 ntBASIC4.89□□□□□ -1.63
SKA3Q8IX90 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.89□□□□□ -1.63
SKA3Q8IX90 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SKA3Q8IX90 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 ICE2P1-201ENST00000512800 1849 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 Z95331.1-201ENST00000623075 23112 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
SKA3Q8IX90 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AL596448.1-201ENST00000415024 392 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC013268.2-201ENST00000420753 337 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC104843.2-201ENST00000427666 297 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AL450023.1-201ENST00000450868 751 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 VDAC2P4-201ENST00000452925 711 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 RNU7-157P-201ENST00000459600 66 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AP002371.1-201ENST00000463604 433 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC074087.1-201ENST00000512059 724 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 OR5AM1P-201ENST00000532136 1032 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC084033.1-201ENST00000550830 633 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC127381.1-201ENST00000555979 939 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC4.88□□□□□ -1.63
SKA3Q8IX90 AC233702.9-201ENST00000581528 203 ntBASIC4.88□□□□□ -1.63
SKA3Q8IX90 H3F3BP2-201ENST00000583907 357 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms